Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi572g00002 ATGTCGAGTTTTCACGTGGGTGGCAAGGTGGTCGACAGAGTCGATTTGCTGAAGAAGAAGCCATGGCTGTGGCGCTTGGACGCTTGGCCTTTTGCTATTGTTTACGCCGCGTGGGTATCGGCAATTCTTCCCAGCTTGGACTTCGTTGATGCTGCTATCGTTTTGGGTGGCCTCGTTGCTCTTCACATCCTCGTTTGGCTCTTCACCGGTTGGTCCGTTGATTTCAAATGTTTTGCCCATTATAGCAAGGTTAAAAATATTCACCAAGCCGATTCTTGCAAAATAACTCCGGCTAAGTTTTCAGGTTCTAAAGAAGTCGTGCCGCTTCATTTTCGGAAATCATCTGCAGGCTCTTCATCAGCAGTGGATATGGAAGAGATTTACTTTGATTTTAGAAAACAACATTTTGTCTATTCAATGGACAAGGGGACTTTTTGTAAACTTCCTTACCCTACAAAGGAAACATTTGGATATTATCTCAAGAGTAGTGGCCATGGTTCTGAAGCTAAAGTTCTTGCTGCTACTGAGAGATGGGGGCGGAATGTATTTGATTATCCTCAGCCAACATTTCAGAAATTGATGAAAGAGCACTGCATGGAGCCTTTTTTTGTATTTCAGGTTTTCTGTGTGGGTCTCTGGTGTTTGGATGAATATTGGTATTATAGTTTGTTCACTCTGTTTATGCTCTTTATGTTTGAGTCAACCATGGCAAAAAGTCGGTTAAAGACTTTAACTGAGTTAAGACGTGTTAGAGTGGACAGTCAGATCCTAATGGTACATCGCTGTGGCAAATGGGTAAAACTCTCTGGTACAGACCTTTTGCCAGGGGATGTTGTCTCTATAGGTCGCTCTTCTGGTCAGAATGGAGAGGAGAAGTCTGTACCAGCAGACATGCTTATATTGGCTGGAAGCGCAATTGTGAATGAAGCTATTCTCACAGGCGAGTCTACTCCTCAATGGAAGGTTTCTATTGCGGGTAGGGGGATTGATGAGAAGTTGTCAGCAAAGCGAGATAAAAGCCATGTTTTATTTGGTGGAACTAAAATTTTGCAGCACACTCCAGATAAGACCTTTCCCCTAAAAACACCTGATGGTGGCTGCTTGGCTGTTGTCCTGAGAACTGGATTCGAGACAAGTCAAGGGAAGTTGATGCGAACAATCTTATTCTCTACAGAAAGGGTGACTGCTAATAGCTGGGAAAGTGGATTGTTCATTTTATTCTTGGTTGTATTTGCTCTAATTGCTGCTGGTTATGTGCTTATTAAGGGGCTAGAAGACCCCTCAAGGAGCAAATATAAACTTATTCTAAGCTGTTCACTTATTGTTACTTCTGTGATACCTCCTGAGTTACCAATGGAATTATCAATAGCTGTTAATACTTCCCTGATTGCACTGGCTCGGCGAGGAATTTTTTGCACAGAACCTTTTAGAATTCCATTTGCTGGGAAGGTTGATATATGTTGTTTTGACAAGACTGGGACGCTTACATCTGATGACATGGAGTTTTCTGGAGTTGTTGGGTTGTCAGGAACTACAGATTTGGAATCTGATATGAGTAGAGTGCCTGTGCGAACAGTAGAAATTCTGGCTTCTTGCCATGCATTGGTATTTGTTGAGAATAAGCTGGTTGGTGATCCTCTCGAGAAGGCTGCCCTTAAGGGAATCGATTGGAGTTATAAATCTGATGAGAAGGCTGTTCCAAAAAAGGGAAATGGCCATCCTGTCCAAATTGTTCAGCGGTATCATTTTGCATCTCACTTAAAACGAATGGCAGTTATTGTTCGAATTCAGGAGGAATTTTTTGCCTTTGTGAAGGGTGCCCCAGAAATTATACAAGAAAGGCTCACTGATATACCAGCATCATATGTTGAGACCTACAAAAAATATACACGTCAAGGGTCTCGGGTTCTTGCTCTGGCATACAAGTCTCTCTCTGACATGACAGTCAGTGAAGCTAGAAGCTTGGATAGGGATATGGTGGAGAGTGGACTTACTTTTGCAGGTTTTGTGGTATTTAATTGTCCCATAAGATCAGATTCAGCCACTATTTTATCTGAATTGAAAGGATCTTCACACGACTTGGTGATGATTACTGGTGACCAAGCTTTGACAGCTTGTCATGTTGCTAGCCAAGTTCATATCATATCAAAACCTACACTGATCCTTGGTCCAGCAAGTAATGGTGAAGGATATAATTGGGTATCCCCTGATGAGACTGAAAACATTCGCTACAGTGAGAAAGAGGTTGAATCTTTATCAGAAACTCATGATCTTTGTGTTGGAGGTGATTGCATTGAGATGTTGCAACAGACATCAGCTCATCTTCTAGTCATTCCTCATGTGAAGGTTTTTGCTAGAGTTGCTCCTGAGCAAAAGGAACTTATTATGACCACTTTCAAAACAGTGGGACGGGTAACTTTGATGTGTGGGGATGGAACCAATGATGTTGGAGCTTTGAAGCAGGCCGATGTAGGAGTAGCTCTTCTGAATGCAGTTCCCCCTACAAAAAGTGGAAACTCCTCTACAGATTCATCTGGGGAAGACGGTGCAAAATCTGTCAAGCAAAAGAAATCTAAGCCTGCACTGGAAACATCTGGAAAGACAGTTAGCCCAATTGGTGAAGGCACTTCAAAAGCCAAAGTTGCTTCAAAATCAGATTCCACCAGCCATTCATCTGGTAACCGTCATCAGGCAGCTGTTGAGATGCAAAAACAGAAGCTTAAGAAGATGATTGATGAGCTTAATGAGGAAGGAGATGGTCGTGCACCCATTGTCAAGCTTGGTGATGCCTCAATGGCTTCTCCATTCACTGCAAAGCATGCATCTGTTGCTCCCACCACTGATATAATTCGTCAAGGTCGAAGTACCCTAGTGACAACACTCCAGATGTTTAAAATTCTGGGCCTCAACTGCCTTGCTACTGCCTATGTGTTGAGTGTTATGTATCTGGATGGTGTCAAGCTAGGTGATATACAAGCCACAATAAGTGGTGTCTTTACTGCTGCTTTTTTCCTCTTCATATCACATGCACGCCCTCTTCCCACTCTCTCAACTGAACGCCCCCACCCTAACATCTTCTGTGCTTATGTCTTCCTTTCCCTCTTGGGACAATTTTCTATTCACTTGCTTTTTCTGATTTCATCTGTGAGAGAAGCTGAAAAACACATGCCAGATGAGTGCATTGAACCTGATTCAGATTTTCATCCTAACCTGGTAAATACTGTTTCCTACATGGTGGGCATGATGCTTCAGGTGGCCACATTTGCCGTGAACTACATGGGCCATCCCTTTAACCAGAGTATTCCTGAAAACAAACCATTCCTCTACGCACTTGCTGCTGCTGTTGGTTTCTTTACTGTGATTACATCTGATCTCTTCAGGGACTTAAATGACTGGTTGAAACTGGTGCCATTGCCAGTAGGTTTAAGGAATAAACTATTGCTTTGGGCATTTCTAACGTTTGTTGTATGCTATTCATGGGAGAGACTATTGAGGTGGGCCTTCCCTGGTAAGATTCCAGCTTGGAAGAAGCGACAAAGGGTTGCTGTATCTAATTTAGAAAAGAAGAAGCAGCTCTAA 3579 0.4281 MSSFHVGGKVVDRVDLLKKKPWLWRLDAWPFAIVYAAWVSAILPSLDFVDAAIVLGGLVALHILVWLFTGWSVDFKCFAHYSKVKNIHQADSCKITPAKFSGSKEVVPLHFRKSSAGSSSAVDMEEIYFDFRKQHFVYSMDKGTFCKLPYPTKETFGYYLKSSGHGSEAKVLAATERWGRNVFDYPQPTFQKLMKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQILMVHRCGKWVKLSGTDLLPGDVVSIGRSSGQNGEEKSVPADMLILAGSAIVNEAILTGESTPQWKVSIAGRGIDEKLSAKRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFALIAAGYVLIKGLEDPSRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVGLSGTTDLESDMSRVPVRTVEILASCHALVFVENKLVGDPLEKAALKGIDWSYKSDEKAVPKKGNGHPVQIVQRYHFASHLKRMAVIVRIQEEFFAFVKGAPEIIQERLTDIPASYVETYKKYTRQGSRVLALAYKSLSDMTVSEARSLDRDMVESGLTFAGFVVFNCPIRSDSATILSELKGSSHDLVMITGDQALTACHVASQVHIISKPTLILGPASNGEGYNWVSPDETENIRYSEKEVESLSETHDLCVGGDCIEMLQQTSAHLLVIPHVKVFARVAPEQKELIMTTFKTVGRVTLMCGDGTNDVGALKQADVGVALLNAVPPTKSGNSSTDSSGEDGAKSVKQKKSKPALETSGKTVSPIGEGTSKAKVASKSDSTSHSSGNRHQAAVEMQKQKLKKMIDELNEEGDGRAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSTERPHPNIFCAYVFLSLLGQFSIHLLFLISSVREAEKHMPDECIEPDSDFHPNLVNTVSYMVGMMLQVATFAVNYMGHPFNQSIPENKPFLYALAAAVGFFTVITSDLFRDLNDWLKLVPLPVGLRNKLLLWAFLTFVVCYSWERLLRWAFPGKIPAWKKRQRVAVSNLEKKKQL 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi572g00002 1192 MobiDBLite consensus disorder prediction 831 900 - -
Sebi572g00002 1192 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166
Sebi572g00002 1192 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Sebi572g00002 1192 FunFam Cation-transporting ATPase 669 844 - -
Sebi572g00002 1192 SFLD p-type atpase 469 955 IPR044492 -
Sebi572g00002 1192 Pfam E1-E2 ATPase 258 468 - -
Sebi572g00002 1192 Gene3D - 669 841 IPR023214 -
Sebi572g00002 1192 MobiDBLite consensus disorder prediction 833 848 - -
Sebi572g00002 1192 Coils Coil 1189 1192 - -
Sebi572g00002 1192 Gene3D - 226 388 - -
Sebi572g00002 1192 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Sebi572g00002 1192 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Sebi572g00002 1192 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Sebi572g00002 1192 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Sebi572g00002 1192 NCBIfam HAD-IC family P-type ATPase 403 509 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi572g00002 1192 NCBIfam HAD-IC family P-type ATPase 780 828 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi572g00002 1192 Coils Coil 897 917 - -
Sebi572g00002 1192 ProSitePatterns Hypothetical cof family signature 2. 809 831 - -
Sebi572g00002 1192 Gene3D - 484 668 IPR023299 GO:0000166
Sebi572g00002 1192 CDD P-type_ATPase_cation 170 1107 IPR047820 -
Sebi572g00002 1192 Pfam Cation transport ATPase (P-type) 539 617 - -
Sebi572g00002 1192 FunFam Cation-transporting ATPase 484 668 - -
Sebi572g00002 1192 SUPERFAMILY Calcium ATPase, transduction domain A 255 387 IPR008250 -
Sebi572g00002 1192 NCBIfam P-type ATPase of unknown pump specificity (type V) 44 1149 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Sebi572g00002 1192 MobiDBLite consensus disorder prediction 880 899 - -
Sebi572g00002 1192 SUPERFAMILY HAD-like 483 836 IPR036412 -
Sebi572g00002 1192 FunFam Cation-transporting ATPase 226 388 - -
Sebi572g00002 1192 SFLD Haloacid Dehalogenase 469 955 - -
Sebi572g00002 1192 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 1169 IPR023298 -
Sebi572g00002 1192 PANTHER CATION-TRANSPORTING ATPASE-RELATED 12 1168 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi572g00002 Sebi-Chr572 29154 43725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi572g00002 1 1192 Primary Pumps ATPases AT5G23630 77.657 0.0 1928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi572g00002 K14950 - gmx:100789385 2199.09