Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi571g00026 ATGCAAACTCTGGCGGATACTTCATGCACTGATTGTTTCATTCATTCTAGCGCAGCATATTACCCAAACTCTGAAGAACATGGAACAGACGTAGGTGCATGTGGGTTTGGTTCATTTGGTGCTACCATCAATGGCGGGGATGTATCAGCTGCATCTAATCTTTATAGAAACGGTGTTGGCTGTGGTGCCTGTTATCAGGTGAGGTGCAGCAACAGTGCTTATTGTTCAGAGAAGGGTGTGACAGTAGTTATAACTGACCAAGGCTCAAGTGATAACACTGATTTCATTCTTAGTAAACATGCCTTTGGCCGGATGGCCCAGACCACTGATGCAGCTGCTTCTCTATTAGCCCTTGGCGTGGTTGATATTGAGTATAGACGCTACCCAAGCAAAAACATAACAATCAAGATAGATGAGAGCAGCAGCAACCCTTATTACTTGGCTTTTGTCATATGGTATCAACAAGGAAGGAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAGAACTTAGTGTGCAAGTTGCTGGATCGGAGCCACGGAGCAGTGTGGACTATTACCTCTCCACCGAGTGGACCTTTGTCTATAAGGATGTTGTTTAGTGATGAAGAAGAGGGAGAAGAAACATGGATTGTTCCTGTTAATAACATACCCCAAGACTGGAAGGCTGGAGAAACATACGACACAGGGGTACAAGTGAACCTATAG 708 0.4506 MQTLADTSCTDCFIHSSAAYYPNSEEHGTDVGACGFGSFGATINGGDVSAASNLYRNGVGCGACYQVRCSNSAYCSEKGVTVVITDQGSSDNTDFILSKHAFGRMAQTTDAAASLLALGVVDIEYRRYPSKNITIKIDESSSNPYYLAFVIWYQQGRRDITAVQLCETQNLVCKLLDRSHGAVWTITSPPSGPLSIRMLFSDEEEGEETWIVPVNNIPQDWKAGETYDTGVQVNL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi571g00026 235 Pfam Expansin C-terminal domain 133 209 IPR007117 -
Sebi571g00026 235 SUPERFAMILY Barwin-like endoglucanases 7 130 IPR036908 -
Sebi571g00026 235 PANTHER EXPANSIN-B3 16 232 - -
Sebi571g00026 235 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 145 229 IPR007117 -
Sebi571g00026 235 Pfam Lytic transglycolase 51 125 IPR009009 -
Sebi571g00026 235 Gene3D - 3 129 IPR036908 -
Sebi571g00026 235 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 31 131 IPR007112 -
Sebi571g00026 235 SUPERFAMILY PHL pollen allergen 131 228 IPR036749 -
Sebi571g00026 235 CDD DPBB_EXLB_N 14 129 - -
Sebi571g00026 235 Gene3D - 130 233 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi571g00026 Sebi-Chr571 319234 321069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi571g00026 10 231 Expansin Gene Family AT4G17030 43.612 2.00e-56 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi571g00026 - - ccaj:109799868 454.136