Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi571g00019 ATGCCTGAACACGATGATGAAGTGTATTGCGTTGAGTTCCTCACTAAACCACTCTCTGAAGACAAGCTCAAAAATATTTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGAAAGTGCTCTGTCTGAATCACTTAAACCTGTCAAAGAATCTGTAGAGTCCATGTTGCAGCTTCAATCAGAGAACAAACAACCTGAAAGTACAATTTCAATAGATTTAGAGAATGTGTCCAGGTACAGTGATAATGACCATGAGCAGTCTGCTGGAAATGATAAATATCCAGCTCCTTCAACACCACAATTAAAACAGGGGGCAAGGTTACTGGATGATGGGGATTGCCATGATCAGACTAATTCCTCAACAGAAAAAGAAACTGGGGAACATGATGGGGAATCTAAATCTGTCGAAACTTCATGTGAGAATTTGAATGGTGAAAGTTCTCCTCAACCAATTAAACCTGAGGAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAAGGGTGAGAGTGTTGTTTCAGTGGATCCACAGAATACAAAGTTTCTCAGCAATGCTGATGGTAACACAACTCCAAATAAAACAGGTGTTCTTAATGATTCATGTGAGAACAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCTGAACTGCACAAAAAATTTGTCAAGGCAGTGGAACAGTTGGGTATTGATCAAGCCATTCCTTCTCGAATATTGGAGCTGATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTACAGAAATATAGAATGCACAAGAGACAAATCATGCCTGGGGAAGAAGATCGAAAATGGCCAAATCAAAGAGATCCAATGCAAAGGAGCTATTGTCTGCAAAGACCAATCATGGCCTACCCTCCATATCATTCTAGTCACACCCTTTCACCAGCTCCTGTATATCCTATGTGGGGACAACCTGGCAGTCAAACAGCTAGTGTACAGATTTGGGGTCCTCATGGTTATCCCCAATGGCAGCCTATTGAAAGTTGGCACTGGAAGCCTTATCCAGGGGTGCATGTGGATGCATGGGGTTGCCCAGTGTTGCCACCTCCTCAAGCTCCTTGTTTTCCCTACACTCAAAATATAGCTGGGTTGCACAATGCTAAAGCAGTGGATTATAGATTTGGCATGCCACCACGAAGTTCCTTTGAGCATTATCCGGCAGAGGAGGTGGTGGACAGGGTTGTGAAGGAGGCAATAAGCAAGCCATGGCTACCATTACCCTTAGGCCTGAAACCTCCATCGATGGATAGTGTGTTGGATGAGCTCTCCAAGAAAGGCATATCCAGCATACCTTTTGGCGGCAATAAGGGTTCTAAACCCCACTGA 1371 0.442 MPEHDDEVYCVEFLTKPLSEDKLKNIWQHVVHKAFNAGESALSESLKPVKESVESMLQLQSENKQPESTISIDLENVSRYSDNDHEQSAGNDKYPAPSTPQLKQGARLLDDGDCHDQTNSSTEKETGEHDGESKSVETSCENLNGESSPQPIKPEETLIKEEEDFANGSKGESVVSVDPQNTKFLSNADGNTTPNKTGVLNDSCENKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQIMPGEEDRKWPNQRDPMQRSYCLQRPIMAYPPYHSSHTLSPAPVYPMWGQPGSQTASVQIWGPHGYPQWQPIESWHWKPYPGVHVDAWGCPVLPPPQAPCFPYTQNIAGLHNAKAVDYRFGMPPRSSFEHYPAEEVVDRVVKEAISKPWLPLPLGLKPPSMDSVLDELSKKGISSIPFGGNKGSKPH 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi571g00019 456 MobiDBLite consensus disorder prediction 165 203 - -
Sebi571g00019 456 MobiDBLite consensus disorder prediction 108 136 - -
Sebi571g00019 456 FunFam Two-component response regulator 208 271 - -
Sebi571g00019 456 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 267 IPR006447 GO:0003677
Sebi571g00019 456 Gene3D - 208 270 - -
Sebi571g00019 456 MobiDBLite consensus disorder prediction 137 151 - -
Sebi571g00019 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 268 IPR017930 -
Sebi571g00019 456 PANTHER TRANSCRIPTION ACTIVATOR GLK1 10 446 IPR044825 GO:0003700|GO:0045893
Sebi571g00019 456 MobiDBLite consensus disorder prediction 54 77 - -
Sebi571g00019 456 MobiDBLite consensus disorder prediction 42 153 - -
Sebi571g00019 456 SUPERFAMILY Homeodomain-like 211 269 IPR009057 -
Sebi571g00019 456 MobiDBLite consensus disorder prediction 173 203 - -
Sebi571g00019 456 Pfam Myb-like DNA-binding domain 215 264 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi571g00019 Sebi-Chr571 246099 249200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi571g00019 10 446 Response Regulator Gene Family AT4G18020 46.087 2.29e-90 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sebi571g00019 Myb_DNA-binding 8.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi571g00019 - - gmx:100779121 758.829