Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi571g00003 ATGTGGAACCCTAGGGAGCAGCAGCAGCAGCCAGAGGAAGAAGAGGAAGAGTCATGGGAGGTGAGAGCTTTTGCAGAAGACACAAGGAACATAATGGGAACAACATGGCCTCCAAGGTCCTACACCTGCACCTTCTGCAGAAGGGAGTTCAGGTCAGCCCAAGCTCTCGGTGGTCACATGAACGTTCACCGCCGTGACCGTGCTCGCCTCCACCAACCTCACCCTCACCCTCCCACTGCTTCATTCATAAATATCCCATCTCAAGAGCTTGTTGCAAATGCAGGATTGTGCCTCCTCTATCATTTACCCAGCCCTAATGCTTCTTCTTCTGCCTTCACTAGTCCTACCTTGAACAATGCAAATGGAGAATCTCCCTCCACTCTTCTCTCCATTTCATCCTCCTATTCACCAAACAACTTGATGATGCAATCCTTTAGTTTGCAAGCTGCAGCACCACCAGTTTCTTCTTACTTTACCAAAGTGGAACAACCACAACCCACAACCTCTACCTCCATAAATAATAATGGACACCTTGAAGAGCTTGATCTAGAACTCCGCCTCGGCCACAAGCCTACACTAAATAGTACCTAG 591 0.4873 MWNPREQQQQPEEEEEESWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQPHPHPPTASFINIPSQELVANAGLCLLYHLPSPNASSSAFTSPTLNNANGESPSTLLSISSSYSPNNLMMQSFSLQAAAPPVSSYFTKVEQPQPTTSTSINNNGHLEELDLELRLGHKPTLNST 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi571g00003 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Sebi571g00003 196 PANTHER OS07G0101800 PROTEIN 13 191 - -
Sebi571g00003 196 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Sebi571g00003 196 Pfam C2H2-type zinc finger 41 65 - -
Sebi571g00003 196 SMART c2h2final6 41 63 IPR013087 -
Sebi571g00003 196 SUPERFAMILY beta-beta-alpha zinc fingers 38 68 IPR036236 -
Sebi571g00003 196 Gene3D Classic Zinc Finger 31 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi571g00003 Sebi-Chr571 37307 37897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi571g00003 1 191 C2H2 Transcription Factor Family AT4G17810 42.784 1.29e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi571g00003 zf-C2H2_6 3.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi571g00003 - - gmx:100818142 231.491