Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi570g00039 ATGGGAGACGGCACTGCTGCCAACGCCTCGAACCGCTCGAACAGCAACAGCGGAAGCAACAAGCCAGAGTGGCTGCAACAGTATGATCTGATAGGGAAGATTGGAGAAGGCACCTACGGTCTCGTCTTCCTCGCTCGGATCAAGTCTCCCACCAATCGTGGAAAATCCATCGCCATCAAGAAATTCAAACAATCCAAGGATGGCGACGGTGTCTCTCCCACTGCCATCCGTGAAATCATGTTACTGAGGGAGATAACACACGAGAATGTTGTGAAGCTTGTGAATGTTCACATCAATCATGCGGACATGTCTCTGTATCTAGCTTTCGATTATGCCGAACATGACCTTTATGAAATAATACGACATCATAGAGACAAGGTCAACCAATCCATTAATCAATACACAGTTAAATCACTACTATGGCAGTTGCTCAATGGACTAAACTATCTGCACAGTAATTGGATAATCCATCGAGATTTAAAGCCATCAAATATATTGGTTATGGGTGAAGGGGAGGAACATGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCTCCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCGCTATTTCAAGGTGCAGAAGTCAAAGCCACACCAAATCCTTTTCAGCTCGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAACAAGATTCGCAACATATACAAGGACACAAATATGACAATGCTAGCCTCTATAGTGTTGTACATCTATCTCCAAAAAGTCCTGCATATGATCTCTTGTCAAAGATGCTTGAATATGATCCTCGAAAGCGTATAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCACAACCTGGGCGGAATGCACTTGTACCCTGTCAACCTGGAGAGACATTTGTGAATTATCCCACACGTCCAGTGGATACAACAACAGATTTTGAAGGAACAACCAACATGCAATCTTCACAGCAGGTTACATCAGGAGCTGGAGTTCCTGGCAACATGCCTGGTCATATGTCAAATAGATCTGTCCCTCGGCCAATGAATGTTGCTGGAATGCAAAGAATGCATCATCAGGCAATGCAAGCTTATAATCTCACGTCCCAGGCAGGGATGGGTGGTGGAATGAATCCTGGTGGCATCCCAATGCAACGAGGTGTTCCACAGGCCAATCAGCAGCAACAGTTGAGAAGAAAAGACCAAATGGGGATGCCAGGTTACCCACAGCAGAAGTCAAGACGCAATCAGGACAGGAGTTTCGCCCATTATCTGTTTTGCATGAACGATTTTAATGGGTCATTAGGATTCATGAGAGATCAAGAGAAGATAAATTTTGGGTCATCTACAGGAAACTTGAGCTCATTCAGGACAATTCATGATCCCCATGTTCAGATGGTTTGCCTTCATGCTGGACCTCACTTTTTGGTAACTGCAGTCAAAGATTTGTTGCATTGGGCACTGGAATCTGGATGCTATAATATGAACTGTACTGCTGGATCAGCAAAGGAGCCTTTGGAAGGGAATGAACACAGAAAATGCTGGAGGTACTGGAGGCGCATGTATATCGTGCTTATAGCTGTACAATTTCCTTGTACTTGCACAGCTGTCAGGCAAGATAAAAAGTTAGATCTCATAGGTTTTTGCCAAAACTAA 1830 0.4383 MGDGTAANASNRSNSNSGSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSPTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNQSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDSQHIQGHKYDNASLYSVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPQPGRNALVPCQPGETFVNYPTRPVDTTTDFEGTTNMQSSQQVTSGAGVPGNMPGHMSNRSVPRPMNVAGMQRMHHQAMQAYNLTSQAGMGGGMNPGGIPMQRGVPQANQQQQLRRKDQMGMPGYPQQKSRRNQDRSFAHYLFCMNDFNGSLGFMRDQEKINFGSSTGNLSSFRTIHDPHVQMVCLHAGPHFLVTAVKDLLHWALESGCYNMNCTAGSAKEPLEGNEHRKCWRYWRRMYIVLIAVQFPCTCTAVRQDKKLDLIGFCQN 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi570g00039 609 Gene3D Transferase(Phosphotransferase) domain 1 111 352 - -
Sebi570g00039 609 FunFam Cyclin-dependent kinase e-1 16 111 - -
Sebi570g00039 609 SUPERFAMILY Protein kinase-like (PK-like) 23 339 IPR011009 -
Sebi570g00039 609 MobiDBLite consensus disorder prediction 1 21 - -
Sebi570g00039 609 ProSitePatterns Protein kinases ATP-binding region signature. 34 61 IPR017441 GO:0005524
Sebi570g00039 609 Gene3D Phosphorylase Kinase; domain 1 12 110 - -
Sebi570g00039 609 FunFam Putative cyclin-dependent kinase E-1 112 351 - -
Sebi570g00039 609 Pfam Protein kinase domain 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi570g00039 609 PANTHER CELL DIVISION PROTEIN KINASE 26 344 - -
Sebi570g00039 609 SMART serkin_6 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi570g00039 609 CDD STKc_CDK8_like 27 338 - -
Sebi570g00039 609 MobiDBLite consensus disorder prediction 454 474 - -
Sebi570g00039 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Sebi570g00039 609 ProSiteProfiles Protein kinase domain profile. 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi570g00039 Sebi-Chr570 615527 625923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi570g00039 1 473 Core Cell Cycle Gene Families AT5G63610 75.208 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Sebi570g00039 Pkinase 2.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi570g00039 K02208 - gmx:100813433 856.67