Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi56g00105 ATGACGAAACCCAAGGACTCCCTCTCCTACTCCACTCTCTTCAATCTCGAGTCTTTGATGAACTTTCAACTTCCAGAACAAGATGATGATTTTGATTATTATGGAAATAGTAGTCAGGATGAGAGCAGAGACAGCCAAGGTGGGGCAGCTGCGAATCACAGTAATGGGAACATGCACAGGAATGTAAATTTGTTAAAGAGGAGGCGGTCTCGAAACAGTGACAACGAGGAGAAGAGTGGTTTTTATACGACACACATGACGGAGGAACGGTATCGATCAATGCTTGGAGAGCATATTCAGAAATATAAGAGGAGGTTTAGGGATACCTTGACTAGTCCTGCTCAAAATCAGGTTGCTGTTCCACTTGTGAAAAGTAACACAGGATTAAAAGCTCACAAGTCAGGGAATGATTGCAGGGGGGGATTACATGCTGCAGAGACTACACCTGAATGGATGAATGATTCCAATTCTCAGAAACCAGGAAACAACCGTGATGCAGATTTCATGCAGAAATTTGGAACTGATAGGATTATGTATGAACCTGCATACTTGGATATTGGGGATGGTATAACGTACAAGATTCCTCCAATTTATGATAAGTTGGCAGCAATGCTGAACCTTCCAAGCTTCTCCGATATCCATGTTGAGGATTTTTACTTAAAGGGTACCTTGGATTTGGGCTCCTTGGCTGAAATGATGCCTGCTGATAAAAGGTCTGGGAATAGAAACCGAGCAGGCATGGGGGAATCTATATCCCAATATGAATCACTTCAGGCACGACTAAAGGTCATGTCAGCTTCTAATTCAGCTCATAAATTCAGTCTGAAAGTATCTGATGTTGGTTTGAATTCCTCCATCCCGGAGGGGGCAGCTGGAAGCATAAAGCGCTCTATTTTGTCTGAGGGTGGTGTATTGCAAGTTTATTATGTGAAGGTTTTGGAGAAAGGTGACACCTATGAGATCATTGAAAGAAGCCTACCTAAGAAACAAAAGGTAAAGAAAGACCCTGCTTTGATAGAGAAGGAGGAAATGGAAAGATTTGGAAAGATTTGGGTAAATATTGTAAGAAGAGACATACCAAGGCATCATAGGAACTTTACTAATTTTCATCGAAAGCAGCTCACCGATGCCAAGAGGGTCTCCGATAGCTGTCAAAGAGAGATTAGAATGAAAGTTAGTAGATCACTTAAATGGACGAGGACTGCTAACATGCGCACCCGTAAACTAGCTAGAGACATGTTACTACTCTGGAAACGAATAGATAAGGAGATGGCAGAAGTGAGGAAAAGAGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCCAAGAGGCAGCAGCAAAGACTTAGTTTTCTTATACAACAAACTGAGTTGTACAGTCACTTTATGCAGAACAAGTCGAACTTACTATCTTCAGAAGCTTTACCCATGGTAGATGAAAATACAAATGACCAAAAAGAACCGATCAGCTCTTCAGATGTTGGGCCTGATGAGGAGGAAGATCCTGAAGAGGCTGAATTGAAGATGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTATAAGCAGAGAAGGTTGACAAGTGCTTTTGACACTGAATGCTTGAGGTTGCGCCAGGCTGGTGAAACTGATTCACTCCCACCAGAAGTTTCTGGGGCAACTAATATTGATTTGCAAACCCCCTCTACCATGCCTGTGGCATCCACAGTTCAGACACCTGAATTATTTAAAGGTCGTCTCAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTACGAGCAGGGTTTAAATGGTATTCTTGCTGATGAGATGGGACTTGGAAAGACCATTCAGGCTATGGCTTTTTTAGCCCATTTAGCTGAGGAAAAAAACATATGGGGACCTTTTCTAGTTGTTGCACCGGCTTCTGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTGAAAAGACTTCCTTATTGGGGCGGGCTTTCAGAGCGGACAGTGCTTAGGAAAAGTATCAACCCAAAGGATCTTTATCGTCGGGAAGCTAAATTTCATATTCTCATCACAAGCTACCAACTATTAGTATCTGATGAGAAGTATTTTCGGCGTGTGAAATGGCAGTATATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTTCAAACAGTATAAGATGGAAGACACTCCTCAGCTTTAATTGTCGGAATCGCCTTCTGTTGACTGGTACACCAATTCAGAATAATATGGCTGAGTTATGGGCTCTTCTGCACTTCATCATGCCAACTTTATTTGACAGCCACGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAGCACCAACTTAATCGGTTGCATTCAATTCTAAAGCCTTTCATGCTGCGACGCGTTAAAAAAGATGTAATTTCTGAGCTGACTACAAAAACTGAGGTTACCGTGCATTGTAAATTGAGTACTAGGCAGCAGGCTTTTTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATCATGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGCTGTTTGAAAGGAGTGAGGGAAGCACATACCTGTACTTTGGAGAGATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGTTAGAGGACGTATATTATTCTGGTGGTCTCAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGAAATGATGCGAAGTTCTGAAACTCTTGGTTCAGCTGTTGGTCATGGTGTTTGCAGAGAATCTTTTCAGAAACATTTTAATATTTTTAGACCAGAAAATGTTTATAGATCTGTCTTTTCAGAAGATATATATGTTAAAAGTGGAAACTTCGGTTTTACACATTTGATGGATTTGTCTCCACAAGAGGTGACGTTTCTGGCCGCTGGCTCTTTAATGGAGCGACTACTATTTTCTATGATGAGATCAGAACAACAATTCATTAATGAAGTTGTAGACTTTCTTACGGAGACCATAGATGATGATCCAGAATGTAGTTACCTTGAGAAAGGAAAAGTGAGAACTATCACACGAATGTTATTGGTACCATCAAGATCTGAGACTAAGTTTTTTCAAAGAAGATTGCCAACTGGGCCCAGCCATACTCCTTTTGAGGCCTTGGTTGTCCCACATCAGGATAGGCTTTTATCAAATGCAAGGCTTCTTCACTCAGCTTACACATATATCCCACAAAGCAGAGCTCCCCCAATTGGTGCTCACTGCTCTGATAGAAACTTCTACTCTAAAATGATTGAAGAATTACATGACCCCTGGGTTAAGAGGTTGTTTGTGGGATTTGCACGTACATCTGATTGTAATGGGCCTAGAAAGCCAGATGGTCCTCATCATTTAATTCAAGAGATAGATTCTGAACTGCCTGTTTCTCAGCCTGCTCTTCAGTTAACGCACAGAATTTTTGGGTCTTCTCCACCTATGCGAAATTTTGACCCAGCAAAATTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGAGCAGAAAATCATCGTGTTCTTTTGTTTGCTCAGATGACCAAGATGTTGAATATTTTGGAGGGTTTAGGGTTTAGCCCATGTGATTAG 3723 0.4131 MTKPKDSLSYSTLFNLESLMNFQLPEQDDDFDYYGNSSQDESRDSQGGAAANHSNGNMHRNVNLLKRRRSRNSDNEEKSGFYTTHMTEERYRSMLGEHIQKYKRRFRDTLTSPAQNQVAVPLVKSNTGLKAHKSGNDCRGGLHAAETTPEWMNDSNSQKPGNNRDADFMQKFGTDRIMYEPAYLDIGDGITYKIPPIYDKLAAMLNLPSFSDIHVEDFYLKGTLDLGSLAEMMPADKRSGNRNRAGMGESISQYESLQARLKVMSASNSAHKFSLKVSDVGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERFGKIWVNIVRRDIPRHHRNFTNFHRKQLTDAKRVSDSCQREIRMKVSRSLKWTRTANMRTRKLARDMLLLWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLSFLIQQTELYSHFMQNKSNLLSSEALPMVDENTNDQKEPISSSDVGPDEEEDPEEAELKMEALKAAQEAVYKQRRLTSAFDTECLRLRQAGETDSLPPEVSGATNIDLQTPSTMPVASTVQTPELFKGRLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSTRQQAFYQAIKNKISLAELFDSNRGQLNEKRIMNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGELEDVYYSGGLNPISYEIPKLVYQEMMRSSETLGSAVGHGVCRESFQKHFNIFRPENVYRSVFSEDIYVKSGNFGFTHLMDLSPQEVTFLAAGSLMERLLFSMMRSEQQFINEVVDFLTETIDDDPECSYLEKGKVRTITRMLLVPSRSETKFFQRRLPTGPSHTPFEALVVPHQDRLLSNARLLHSAYTYIPQSRAPPIGAHCSDRNFYSKMIEELHDPWVKRLFVGFARTSDCNGPRKPDGPHHLIQEIDSELPVSQPALQLTHRIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEGLGFSPCD 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi56g00105 1240 Gene3D - 558 838 IPR038718 -
Sebi56g00105 1240 FunFam Putative DNA helicase INO80 557 835 - -
Sebi56g00105 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 813 IPR027417 -
Sebi56g00105 1240 Coils Coil 422 461 - -
Sebi56g00105 1240 Pfam DNA-binding domain 345 474 IPR020838 GO:0003677
Sebi56g00105 1240 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 597 768 IPR014001 -
Sebi56g00105 1240 ProSiteProfiles DBINO domain profile. 350 475 IPR020838 GO:0003677
Sebi56g00105 1240 MobiDBLite consensus disorder prediction 488 512 - -
Sebi56g00105 1240 MobiDBLite consensus disorder prediction 38 61 - -
Sebi56g00105 1240 SMART ultradead3 581 776 IPR014001 -
Sebi56g00105 1240 MobiDBLite consensus disorder prediction 27 85 - -
Sebi56g00105 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 815 1232 IPR027417 -
Sebi56g00105 1240 Gene3D - 1170 1235 IPR027417 -
Sebi56g00105 1240 MobiDBLite consensus disorder prediction 67 85 - -
Sebi56g00105 1240 PANTHER HELICASE SRCAP-RELATED 558 1232 - -
Sebi56g00105 1240 Pfam SNF2-related domain 600 887 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi56g00105 Sebi-Chr56 2441516 2454065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi56g00105 606 895 RAD5 or RAD16-like Gene Family AT5G43530 28.571 6.35e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi56g00105 SNF2_N 3e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi56g00105 K11665 - gmx:100780615 2144.39