Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi56g00104 ATGAACTATAGAAAATATAAGTATTTTAGACTTGATGGGTCGTCTACTATTCAGGACCGCAGAGACATGGTCAGAGACTTTCAGCATAGGGCTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGACCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTAATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCATAGAGCTAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTCTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTTCAGTTGGAGCAGAAATTAAAGGAAATCCCTCTCCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTATGAAGGGTATTCGGTTAAATGAAGAAGGTGATGCTTCTCTGGAAGATCTATCAAATTCTTTAGCCCAGGATACTACAGATTATGATCTTTTCATGGACCCTGAGGGATCAAAGTCCAGTAATAAAAAGAGAAAAGCTGCCTCAGATAAGCAAATTTCAATGCCAAAGAATTCGCAGAAGATGAATGAAGGTGATGAATTGGATGATGTCCACTTAAATAGTGATCTAGTGGGTCAGAAACCCAAGAGACCAAAGAGGATAAAGAAGAAAGTAAATGAAAAGTTTGAAGAGGCTTTTGCTGGGACAGGTACCGTGTTCCCAGAGCAAACCCAGTTTCAACCTCCCAGTGAATTCAGTGCTGGAGGTGCTAAAGTAGAATCAGCCAAGACACCTGAAGACTAG 876 0.4064 MNYRKYKYFRLDGSSTIQDRRDMVRDFQHRADIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPLQVKDKQKKKQPMKGIRLNEEGDASLEDLSNSLAQDTTDYDLFMDPEGSKSSNKKRKAASDKQISMPKNSQKMNEGDELDDVHLNSDLVGQKPKRPKRIKKKVNEKFEEAFAGTGTVFPEQTQFQPPSEFSAGGAKVESAKTPED 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi56g00104 291 Pfam Helicase conserved C-terminal domain 5 78 IPR001650 -
Sebi56g00104 291 Gene3D - 1 229 IPR027417 -
Sebi56g00104 291 MobiDBLite consensus disorder prediction 194 208 - -
Sebi56g00104 291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 151 IPR027417 -
Sebi56g00104 291 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 153 IPR001650 -
Sebi56g00104 291 SMART helicmild6 1 78 IPR001650 -
Sebi56g00104 291 PANTHER HELICASE SRCAP-RELATED 1 181 - -
Sebi56g00104 291 CDD SF2_C_SNF 4 89 - -
Sebi56g00104 291 MobiDBLite consensus disorder prediction 258 291 - -
Sebi56g00104 291 MobiDBLite consensus disorder prediction 219 239 - -
Sebi56g00104 291 MobiDBLite consensus disorder prediction 183 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi56g00104 Sebi-Chr56 2430482 2432567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi56g00104 1 98 RAD5 or RAD16-like Gene Family AT5G22750 41.837 1.84e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi56g00104 K11665 - gmx:100780615 449.899