Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi56g00097 ATGGAGAGCCTCCTAAAAGATTTCGAGGTGGAGCACAAGAATCCGTCCGTCGAAGCTCTAAGGAGATGGAGATCCGCCGTCAGTTTCGTCGTCAAGAACCGCCGCAGACGCTTCCGTATGGTCGCCGATCTCGACAAGCGCTCCGAAGCAGAACAGATTAAGCAGGGAATCAAGGAAAAAATTCGGATTGCTCTCTATGTTCAGAAGGCAGCATTGCAATTTATTGATGCTGGTAATCGAGTTGAATACGAGCTATCACAAGAAGCAAGAGAAGCTGGTTTTGATATTCATCCAGATGAGATTGCTTCTATTGTTCGTGGCCATAATTTGAAGAGCTTGGGTAATAAGGGTGGAGTAGAAGCCATTGCAAGGAAACTGTCAGTCTCCGTGGATGAAGGTGTCAGTGAAACGAGTATAAATTGCAGACAACAGATCTATGGGGTCAACCGTTATACAGAGAAACCTCCAAGGTCATTCCTGATGTTTGTGTGGGATGCACTGCAGGACTTAACTCTAATAATTCTAATGGTTTGTGCTGTAGTTTCTATAGGTGTAGGGATGGCCACTGAAGGGTGGCCAAAGGGAATGTATGATGGTGTGGGAATCATACTCAGTATATTATTGGTAGTCATTGTTACTGCTGTCAGTGACTACAAACAATCCCTGCAGTTCAGGGATTTGGACAAAGAAAAGAAAAAGATCTTTGTTCAGGTCACCAGGGATGGAAAAAGACAGAGGATCTCAATTTATGATATAGTAGTTGGTGATATTGTTCATTTGTCAACCGGTGATCAAGTTCCAGCTGATGGGATTTATATATCAGGATACTTTTTGCTTATTGATGAATCTAGTTTGTCAGGTGAGAGCGAACCTGTAAATGTAAATGAAGAAAAGCCTTTTCTTCTCTCAGGAACCAAAGTGCAGGATGGTCAGGGGATAATGTTAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAAACTCTAAATGAAGGAGGAGAGGATGAGACCCCATTGCAGGTGAAGTTGAATGGAGTTGCTACTATTATTGGTAAAATTGGTTTGACCTTTGCAGTTGTGACATTTTTGGTTTTGACTATAAGGTTTCTTGTCGAAAAAGCAATTCATGTTGTTGCTGTTCCTGAAGGATTACCACTAGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGAAAGAGCACTTGTGAGACATCTTTCTGCTTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGCACATTGACCACTAACCATATGGTAGTTAATAAAATATGGATATGCGAGAAAACGACAGAGATGAAAGGTAATGATGAGAGTGCAGATGAACTGAAAACAAAGATACCTGAAGGAGTTCTAAGCATCCTTATGCATGCTATATTTCAAAATACTTCTGCTGAAGTAGTTAAGAATAAAGATGGAAAGAACACAATATTGGGAACCCCAACAGAATCAGCATTATTGGAATTAGGCTTGCTTTTGGGTGGTGATTCTGATTCCCATACCCGTAGTAGAGCATATAAGATACTCAAAGTTGAGCCGTTTAATTCAGTCCGGAAGAAGATGTCAGTGCTTGTGGGTCTTCCTAATGGAGGGGTCCAAGCTTTCTGCAAAGGTGCATCAGAAATAATATTAAAAATGTGTGACAAAATTATTGATTGCAATGGTGAAGTTGTTGATCTTCCTGAAGACCGGGCTAATGATGTTTCTGATGTTATAAATGGCTTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTGGCTGTTAAAGATGTAAATGAAACCCAAGGGGAAGCCAACATTCCTGATAGTGGCTATACTCTAATAGCCATAGTAGGAATCAAGGATCCTGTACGCCCTGGGGTTAAGGAAGCTGTTCAAACTTGTATAGCCGCTGGAATAATTGTCCGCATGGTCACTGGTGATAACATACATACAGCTAGAGCTATAGCTAAAGAATGTGGTATACTTACTGAGGGTGGTGTAGCCATAGAAGGACCAAATTTTCGTGACTTGTCACCGGAGCAAATGAAGGATGTCATACCAAAAATTCAGGTGATGGCACGATCCTTGCCACTCGACAAGCATAAGTTAGTGACTAATTTAAGGAATATGTTTGGTGAGGTTGTCGCTGTTACTGGTGATGGAACTAATGATGCTCCTGCACTGCATGAGTCAGACATTGGACTTGCCATGGGCATAGCTGGAACTGAGGTTGCCAAAGAAAAGGCTGATGTCGTTATAATGGATGATAACTTCGCAACAATTATCAATGTGGTCAAATGGGGACGAGCAGTATATATAAACATTCAAAAATTTGTGCAATTTCAATTAACAGTTAATGTTGTTGCTCTGGTTATCAACTTCGTTTCTGCATGCATCACTGGATCTGCTCCACTCACAGCTGTTCAGCTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTAGCCCTGGCTACTGAACCTCCTAATGATGGACTTTTGAAAAGACCCCCAGTTGCAAGGGGAGCAAGCTTTATCACCAAAACTATGTGGAGGAATATCATTGGTCAAAGTATATATCAATTAATTGTGCTTGCCATTCTAAATTTTGACGGAAAGAGGCTACTTAGAATTAGTGGTTCAGATGCAACTGAAGTGCTCAACACTTTGATATTCAACGCTTTTGTATTTTGCCAGGTGTTTAATGAGATAAACAGCAGAGATATTGAAAAGATAAACATATTCAGAGGCATGTTTGACAGCTGGATATTTTTGTTGATAATTTCTGCCACCGTGGCATTTCAAGTGGTGATAGTTGAATTCCTGGGAGCGTTTGCCAGCACCGTGCCTCTAAACTGGCAATTCTGGTTACTGAGTATCTTAATTGGTGCAGTTAGCATGCCTATAGCTGCTATCCTGAAGTGCATCCCAGTTGAAAGAAATACCAATAAGCACCATGATGGCTATGAGCCACTTCCATCTGGTCCCGAGCTGGCATAA 3036 0.4134 MESLLKDFEVEHKNPSVEALRRWRSAVSFVVKNRRRRFRMVADLDKRSEAEQIKQGIKEKIRIALYVQKAALQFIDAGNRVEYELSQEAREAGFDIHPDEIASIVRGHNLKSLGNKGGVEAIARKLSVSVDEGVSETSINCRQQIYGVNRYTEKPPRSFLMFVWDALQDLTLIILMVCAVVSIGVGMATEGWPKGMYDGVGIILSILLVVIVTAVSDYKQSLQFRDLDKEKKKIFVQVTRDGKRQRISIYDIVVGDIVHLSTGDQVPADGIYISGYFLLIDESSLSGESEPVNVNEEKPFLLSGTKVQDGQGIMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIGLTFAVVTFLVLTIRFLVEKAIHVVAVPEGLPLAVTLSLAFAMKKLMNERALVRHLSACETMGSASCICTDKTGTLTTNHMVVNKIWICEKTTEMKGNDESADELKTKIPEGVLSILMHAIFQNTSAEVVKNKDGKNTILGTPTESALLELGLLLGGDSDSHTRSRAYKILKVEPFNSVRKKMSVLVGLPNGGVQAFCKGASEIILKMCDKIIDCNGEVVDLPEDRANDVSDVINGFASEALRTLCLAVKDVNETQGEANIPDSGYTLIAIVGIKDPVRPGVKEAVQTCIAAGIIVRMVTGDNIHTARAIAKECGILTEGGVAIEGPNFRDLSPEQMKDVIPKIQVMARSLPLDKHKLVTNLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKEKADVVIMDDNFATIINVVKWGRAVYINIQKFVQFQLTVNVVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLKRPPVARGASFITKTMWRNIIGQSIYQLIVLAILNFDGKRLLRISGSDATEVLNTLIFNAFVFCQVFNEINSRDIEKINIFRGMFDSWIFLLIISATVAFQVVIVEFLGAFASTVPLNWQFWLLSILIGAVSMPIAAILKCIPVERNTNKHHDGYEPLPSGPELA 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi56g00097 1011 PANTHER CATION TRANSPORTING ATPASE 88 990 - -
Sebi56g00097 1011 Pfam Cation transport ATPase (P-type) 480 568 - -
Sebi56g00097 1011 CDD P-type_ATPase_Ca_PMCA-like 142 862 - -
Sebi56g00097 1011 Gene3D - 15 77 - -
Sebi56g00097 1011 PRINTS H+-transporting ATPase (proton pump) signature 729 745 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi56g00097 1011 PRINTS H+-transporting ATPase (proton pump) signature 586 604 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi56g00097 1011 PRINTS H+-transporting ATPase (proton pump) signature 761 786 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi56g00097 1011 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 990 IPR023298 -
Sebi56g00097 1011 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Sebi56g00097 1011 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Sebi56g00097 1011 PRINTS P-type cation-transporting ATPase superfamily signature 729 748 - -
Sebi56g00097 1011 PRINTS P-type cation-transporting ATPase superfamily signature 753 765 - -
Sebi56g00097 1011 PRINTS P-type cation-transporting ATPase superfamily signature 648 658 - -
Sebi56g00097 1011 PRINTS P-type cation-transporting ATPase superfamily signature 626 637 - -
Sebi56g00097 1011 SMART Cation_ATPase_N_a_2 113 187 IPR004014 -
Sebi56g00097 1011 NCBIfam HAD-IC family P-type ATPase 696 817 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi56g00097 1011 NCBIfam HAD-IC family P-type ATPase 202 448 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi56g00097 1011 NCBIfam HAD-IC family P-type ATPase 522 674 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi56g00097 1011 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 431 638 IPR023299 GO:0000166
Sebi56g00097 1011 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Sebi56g00097 1011 Pfam E1-E2 ATPase 235 404 - -
Sebi56g00097 1011 Gene3D - 435 633 IPR023299 GO:0000166
Sebi56g00097 1011 SUPERFAMILY HAD-like 424 834 IPR036412 -
Sebi56g00097 1011 FunFam Calcium-transporting ATPase 15 76 - -
Sebi56g00097 1011 FunFam Calcium-transporting ATPase 213 333 - -
Sebi56g00097 1011 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Sebi56g00097 1011 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Sebi56g00097 1011 Gene3D - 133 333 - -
Sebi56g00097 1011 Gene3D - 165 988 - -
Sebi56g00097 1011 Pfam Cation transporter/ATPase, N-terminus 116 182 IPR004014 -
Sebi56g00097 1011 SFLD p-type atpase 407 781 IPR044492 -
Sebi56g00097 1011 FunFam Calcium-transporting ATPase 746 992 - -
Sebi56g00097 1011 Gene3D - 422 774 IPR023214 -
Sebi56g00097 1011 Pfam Cation transporting ATPase, C-terminus 814 987 IPR006068 -
Sebi56g00097 1011 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 991 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Sebi56g00097 1011 SFLD C1.7: P-type atpase like 407 781 - -
Sebi56g00097 1011 FunFam Calcium-transporting ATPase 626 774 - -
Sebi56g00097 1011 FunFam Calcium-transporting ATPase 435 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi56g00097 Sebi-Chr56 2308896 2321089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi56g00097 57 1008 Primary Pumps ATPases AT3G57330 72.569 0.0 1449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi56g00097 K01537 - gmx:100783489 1696.02