Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi56g00077 ATGGTGATGGCGTGGGAAGATCTAACAGTAGAGGTCCCTAGTAGTAGAAGTAGTGTTCCAAACAAGAAGAAGTTGTTGCTTCATGGGATCACTGGTTTTGCGGAACCTGGTAGCATCATGGCCGTCATGGGTCCTTCTGGCTGTGGCAAAACCACCTTACTCGACTCATTGGCAGGAAGACATCCTACAAATGTTATAGTGACCGGTAGCATTCTAATAAACGGCCGGAAGAATAGAAGACATGATTGCAGACAAGTGTCTTATGTGGCTCAAGAGGAACTTTTCTTGGGAACTTTGACTGTAAGAGAAAGCCTCACATACTCTGCAAACATGAGGCTTCCTTCTAAAATGACCAAAGAAGAGATAAATGAAGTGGTGGAAGAAACAATAATGGAAATGGGTCTGGAAGATTGTGCAGATAACAACATTGGGAATTGGCATTTAAGGGGTATTAGTAATGGTGAAAAGAAGAGACTTAGCATTGCTCTTGAGATTTTGACACAACCTCAAGTCCTACTTCTTGATGAACCAACTAGTGGGCTTGATAGTGCCTCAGCTTTCTATGTTATCCATGCTCTAAGCAACATAGCTTGTAATGGAAAGATAGTTATTTGTTCCATTCACCAACCAAGTAGTGAAACTTTTAATCTTTTTGATGATTTGCTTTTGCTCTCATGTGGGGAAACTGTTTATTTTGGAGAAGCAAAGATGGCTCTAAAGTTTTTTGCTGATGCAGGGTTCCCTTGTCCTACTAGAAGAAATCCCTCAGATCATTACATTTTGTGCATTAATTTGGACTTTGATTTAGTTACCGAAGCACTAGCAAGATCGCATTTAAGTCTTCCATCAACATCCAATTTAGCAGTAGGCATGAAAACAACAGAGGTTAGAGCAACACTTATTGAGAGTTACAAAAGTTCAGAGTTAATGATCAATGCAAGAAGAAGAATTCAACAACTGAAACCCAATGAAGAACAAGTAACTGAGTCCAACCTAAGGAGCACTACCAGCTGGTGCAGACAACTATGCACATTGACCAAGAGATCTTTCCTAAACATGACTAGGGACATGGGATACTATTGGCTAAGGATCATATTCTACTTATTGGTGTCAATCTGTATGGGCACCCTCTTTTTTCATATTGGCACAGACAACAACTCAATCTTGGCAAGAGGAAAATGTCTCTCATTCATCTATGGGTTCATGATTTGTTTGTCATGTGGAGGATTACCATTTTTCATTGAAGAACTGAAGGTGTTCTATGGTGAAAGGTCCAAAGGGCATTATGGAGAGGCTGCATTTGTACTATCAAATGCTATATCATCATTTCCTTTTCTTCTTCTAATATCACTCTCCTCTGGATTAATTATTTACTCCATGGTGCAATTTCATCCGGGTATAACAAATTGTACATTTTTCTGCATCAACTTGTTCTGCTGCCTCTCTGTTGTTGAGAGCTGTGTCATGGTTGTAGCCTCATTGGTCCCCAATGTGTTGATGGGCATAGGAACAGCAACTGGTGTAATAATTTTTATGATGATGTCCTCCCAAATATTCAGACCACTACCTGACATCCCAAAGATATTTTGGCGCTATCCCATGTCCTACCTCAGTTTTGCAGCTTGGGCAGTGCAGGGACAATACAAGAATGACATGCTTGGGCTTGAATTTGATCCTCTGCTGTCTGGTTACCCAAAAGTTTCTGGAGAACAAGTCTTAACTACGAATGAGATCATCGACACCCATTTTGTGGTTTTATGCCAAGGAAACTCTACGCTTTGGAGAAGGATGTTTACCCAGTACCAGTAA 1809 0.4052 MVMAWEDLTVEVPSSRSSVPNKKKLLLHGITGFAEPGSIMAVMGPSGCGKTTLLDSLAGRHPTNVIVTGSILINGRKNRRHDCRQVSYVAQEELFLGTLTVRESLTYSANMRLPSKMTKEEINEVVEETIMEMGLEDCADNNIGNWHLRGISNGEKKRLSIALEILTQPQVLLLDEPTSGLDSASAFYVIHALSNIACNGKIVICSIHQPSSETFNLFDDLLLLSCGETVYFGEAKMALKFFADAGFPCPTRRNPSDHYILCINLDFDLVTEALARSHLSLPSTSNLAVGMKTTEVRATLIESYKSSELMINARRRIQQLKPNEEQVTESNLRSTTSWCRQLCTLTKRSFLNMTRDMGYYWLRIIFYLLVSICMGTLFFHIGTDNNSILARGKCLSFIYGFMICLSCGGLPFFIEELKVFYGERSKGHYGEAAFVLSNAISSFPFLLLISLSSGLIIYSMVQFHPGITNCTFFCINLFCCLSVVESCVMVVASLVPNVLMGIGTATGVIIFMMMSSQIFRPLPDIPKIFWRYPMSYLSFAAWAVQGQYKNDMLGLEFDPLLSGYPKVSGEQVLTTNEIIDTHFVVLCQGNSTLWRRMFTQYQ 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi56g00077 602 Gene3D - 6 259 IPR027417 -
Sebi56g00077 602 Pfam ABC-2 type transporter 340 546 IPR013525 GO:0016020|GO:0140359
Sebi56g00077 602 Pfam ABC transporter 31 179 IPR003439 GO:0005524
Sebi56g00077 602 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 3 251 IPR003439 GO:0005524
Sebi56g00077 602 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 2 576 - -
Sebi56g00077 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 241 IPR027417 -
Sebi56g00077 602 SMART AAA_5 36 227 IPR003593 GO:0016887
Sebi56g00077 602 Pfam ABC-2 type transporter 208 261 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi56g00077 Sebi-Chr56 1786896 1792640 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi56g00077 34 212 Calmodulin-binding Proteins AT2G36910 29.412 8.73e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi56g00077 - K05681 lja:Lj1g3v4239020.2 944.495