Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi56g00068 ATGGAGGGATCAACAATAAGTGATCATAAGGGGTTGTTGGAATGTGCAAGAAAGTGCAGTCCACCACCGTTCTTGTTGAAGACATACATGCTTGTGGAGGATCCGGCCACCGATGATGTGATATCATGGAATGTTGAAGGAACGGCGTTTGTGGTGTGGCAGCCGGCGGAGTTTGCTCGTGATCTCCTTCCAACTCTCTTCAAACATAGCAACTTCTCAAGTTTTGTGCGCCAGCTTAATACCTATGGGTTTCGTAAAGTTGCAACAAACAGATGGGAATTTTGCAACGAGAGGTTCAGGAAAGGTGAAAGAGAAGTTTTATCGGAGATTCGGCGAAGAAAAGCTTGGAGCAGCAAACAACAGAAACAACAGCAAGTTGACTCTGATGAAGATCAAAGGTCATCATCAACCTCATCATCTTCGGGTAATCTTGTGGATGAAAACAAGCGACTCAAGAAGGAGAATGGGGATTTGAATTCTGAGCTCACAAATATGAAAAGGAAGTGTAAGGAACTTCTTGATTTGGTTGCCAAATATTCTTCTTCTTCACAACATGCAAAGCCAAAGGATGAGGAAGAAGAAGATGAAAGGCCAATGCTGTTTGGTGTGAGATTAGATGTTGAAGGAGAGAGGGGAATCAAGAGGAAGAATAGATCACCTGAGATTAATGAAAGCGCAAGCATTTTGCTGTCTCAGTCATGCAAATAG 708 0.4308 MEGSTISDHKGLLECARKCSPPPFLLKTYMLVEDPATDDVISWNVEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATNRWEFCNERFRKGEREVLSEIRRRKAWSSKQQKQQQVDSDEDQRSSSTSSSSGNLVDENKRLKKENGDLNSELTNMKRKCKELLDLVAKYSSSSQHAKPKDEEEEDERPMLFGVRLDVEGERGIKRKNRSPEINESASILLSQSCK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi56g00068 235 MobiDBLite consensus disorder prediction 184 221 - -
Sebi56g00068 235 Coils Coil 148 175 - -
Sebi56g00068 235 FunFam Heat stress transcription factor B-4 16 114 - -
Sebi56g00068 235 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Sebi56g00068 235 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 181 IPR027725 -
Sebi56g00068 235 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi56g00068 235 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi56g00068 235 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi56g00068 235 MobiDBLite consensus disorder prediction 180 235 - -
Sebi56g00068 235 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi56g00068 235 MobiDBLite consensus disorder prediction 130 145 - -
Sebi56g00068 235 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi56g00068 235 Gene3D - 16 114 IPR036388 -
Sebi56g00068 235 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi56g00068 235 MobiDBLite consensus disorder prediction 117 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi56g00068 Sebi-Chr56 1317560 1320208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi56g00068 21 206 HSF AT2G41690 57.971 2.13e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi56g00068 HSF_DNA-bind 8.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi56g00068 K09419 - gmx:100802739 309.301