Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi56g00067 ATGGAAATAAGTGGCAATGGTGACAAAGACAGTCATGGTATTGAAAGCTATGGTATATCTGTAACAACCCTGGAGGAGGTTTTCTTGAGAGTTGCAGGATGTGACTATGACGAAGTTGAATGCTTTGAAGAAAATAAACCCTCCCTTATATCAGATTCTGTGACTTCTCTTCCTTATAATGACTGTCCATCAACAAAAATATGTTATCTTAAAGTGTTTGGAAATTATAAGAAGATTCTTGGCTTCATGTCTACCATGGTGGGAAGAGCTTGTCACTTAATTTTTGCTACTGTTATTAGTTTCATCAACTTCTTGGGTATGCAGTGTTGTAGCTGTTGTCTCCTTACTAGGTCAACATTTTGGCAACATTCTAAAGCTTTATTCATTAAGAGAGCAATATCTGCTCGGAGAGATCACAAAACGATTATTTTCCAGCTAATGATTCCTGCTGTCTTCTTGTTTATTGGTCTTCTATTTCTTGAGCTCAAGCCACATCCAGATCAGCAGTCACTGACGCTTTCAACTTCTTATTTTAATCCTCTGTTGAGTGGTGGGGGTGGGGGAGGTCCAATTCCTTTTAATCTATCTCTTCCAATTGCTGAAAAGGTAGCACAAAATGTCAAAGGAGGGTGGATTCAAAGGTGCAAACCAAGCTCATACAAGTTCCCCAATTCAGAAAAGTCATTAGCTGATGCAGTGGAAGCAGCAGGCCCAACTCTGGGACCTGCTCTACTTTCAATGAGTGAATACTTGATGTCTAGCTTTAATGAATCCTACCAATCTAGGTATGGGGCAATTGTGATGGATGATCAAAATAATGATGGAAGTTTAGGCTACACTGTGTTACACAACTTTTCTTGTCAACATGCTGCTCCCACCTTTATCAATTTGATGAATTCTGCAATTCTTAGGCTTGCTACTCATAACATGAATATGACAATTCAGACACGCAACCATCCTCTACCAATGACACAAAGTCAGCGCTTGCAACGTCATGACCTGGATGCCTTCTCTGCTGCTATCATTGTCAATATTGCCTTTTCTTTTATCCCTGCCTCATTTGCTGTTTCAATTGTCAAGGAACGTGAAGTGAAAGCGAAGCACCAACAACTAATCAGCGGGGTTTCAGTCCTTTCATATTGGGCTTCTACATTTATGTGGGACTTTGTGAGCTTCTTGTTTCCGGCCTCTTTTGCCATACTTCTCTTTTACATCTTTGGCGCAACATACATTGTTGGGTTTGTGATGGGAGTGGATCCTCTCTTGTCTGGATCAGTTTGTTGGAGGGGTTTCTTTGTTACCAACGATCGTCATGCTTTTGGAATATGGACTTGCAATTGCATCGTCAACATATTGCCTTACATTTTTCTTTTTCGACCATACCATGGCTCAGAACGTGGTTCTCCTGGTCCACTTTTTACTGGATTGATATTGATGGTTATCTCATTCATTATGGGACTCATCCCATCCACAATAAGCGCCAATTCTTTTCTTAAGAATTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGTCTTGCTTCATTAGCTCTTCTGCGGCAAGGAATGAAAGATAAAACAAGTGATGGAGTGTTTGATTGGAATGTTACTGGTGCTTCCATTTGTTATCTTGCTGTTGAGAGCTTTAGTTACTTTTTGTTGACACTCGCACTTGAAATTTTTCCTTCTCTCCAATTGACTTCATTCATGATAAAGAAATGGTGGCAGAAAATGAATATCTTCCAGCATAATACTACTTATCTGGAACCTCTATTAGAATCAACCCCAGAAAATGTTGTTATGGACCTCGATGAAAATGTAGATGTGAAAACAGAAAGGAACAGAGTACTTTCAGGTTCCCTTGACAATTCTATTATCTACTTGCGCAATCTTCGTAAGGTGTATTCTGAAGGAAAGTATCATGGGAAAAAAGTTGCTGTCGATTCATTAACCTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGGACAAATGGAGCTGGAAAGACAACGACACTTTCTATGCTATGTGGGGAAGAATCTCCTTCTGATGGGACAGCTTTTATTTTTGGCAAAGATATATGCTCCCATCCCAAGGCTGCCTGTAAATATATTGGATATTGTCCACAGTTTGATGCTCTACTGGAATTCTTGACTGTCCAAGAGCATCTGGAGCTTTATGCTAGAATAAAAGGTGTTCCAGACTGCACAATAGACAATGTTGTTATGGAAAAGTTGGTGGAGTTTGACTTATTGAAGCATGCTAATAAACCATCATTTTCACTCAGTGGAGGGAATAAAAGGAAACTTTCTGTTGCAATTGCAATGATTGGAGATCCTCCTATTGTCATTCTTGATGAGCCATCCACAGGTATGGATCCCATTGCCAAAAGGTTCATGTGGGATGTAATATCTAGAATCTCAACTAGACGAGGAAAGACTGCGGTGATTCTTACTACCCACAGCATGAATGAAGCTCAAGCCTTATGTACGAGAATAGGGATTATGGTTGGTGGACGGCTAAGATGCATTGGAAGTCCACAACATCTAAAAACAAGATTTGGGAATCATCTAGAACTAGAGGTGAAACCTACTGAAGTGAGCTCTGTGGACTTACAAGCACTCTGCCAAGCTATTCAGGAAATACTTTTGGATGTCCCTTCTCAACCTAGAAGCTTACTTAACGACCTTGAAATTTGCATTGGGGGCATTGACTCTACCTCAGGAAATACCTCTGTTGCAGAGATTAGCTTGACACGAGAAATGATAGGCTTAATTGGACGCTGGCTTGGTAATGAAGAAAGAGTGAAGACTCTAATCTCTTCACCTGTCTATGATGGAGCTTCTCATGAACAGTTATCAGAACAATTATTTCGAGATGGTAGTATTCCATTGCCAGTATTTTCTGAGTGGTGGTTGTCCAAAGAAAAATTCTCAGAAATTGATTCATTTATTCTCTCGGCATTTCGGGGAGCAAGATGTCAAGGGTACAATGGTTTGAGCATCAGATACCAGTTACCATATGATGAGGATTTTTCCCTGGCAGATGTTTTCGGACTTCTTGAAGGAAACAGCTAA 3084 0.4001 MEISGNGDKDSHGIESYGISVTTLEEVFLRVAGCDYDEVECFEENKPSLISDSVTSLPYNDCPSTKICYLKVFGNYKKILGFMSTMVGRACHLIFATVISFINFLGMQCCSCCLLTRSTFWQHSKALFIKRAISARRDHKTIIFQLMIPAVFLFIGLLFLELKPHPDQQSLTLSTSYFNPLLSGGGGGGPIPFNLSLPIAEKVAQNVKGGWIQRCKPSSYKFPNSEKSLADAVEAAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQNNDGSLGYTVLHNFSCQHAAPTFINLMNSAILRLATHNMNMTIQTRNHPLPMTQSQRLQRHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSVLSYWASTFMWDFVSFLFPASFAILLFYIFGATYIVGFVMGVDPLLSGSVCWRGFFVTNDRHAFGIWTCNCIVNILPYIFLFRPYHGSERGSPGPLFTGLILMVISFIMGLIPSTISANSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTGASICYLAVESFSYFLLTLALEIFPSLQLTSFMIKKWWQKMNIFQHNTTYLEPLLESTPENVVMDLDENVDVKTERNRVLSGSLDNSIIYLRNLRKVYSEGKYHGKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAACKYIGYCPQFDALLEFLTVQEHLELYARIKGVPDCTIDNVVMEKLVEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLQALCQAIQEILLDVPSQPRSLLNDLEICIGGIDSTSGNTSVAEISLTREMIGLIGRWLGNEERVKTLISSPVYDGASHEQLSEQLFRDGSIPLPVFSEWWLSKEKFSEIDSFILSAFRGARCQGYNGLSIRYQLPYDEDFSLADVFGLLEGNS 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi56g00067 1027 FunFam ABC transporter A family member 1 616 870 - -
Sebi56g00067 1027 CDD ABC_subfamily_A 627 853 - -
Sebi56g00067 1027 ProSitePatterns ABC transporters family signature. 764 778 IPR017871 GO:0005524|GO:0016887
Sebi56g00067 1027 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 136 564 IPR026082 GO:0016020|GO:0055085|GO:0140359
Sebi56g00067 1027 Pfam ABC transporter 649 791 IPR003439 GO:0005524
Sebi56g00067 1027 Gene3D - 619 869 IPR027417 -
Sebi56g00067 1027 Pfam ABC-2 family transporter protein 140 557 IPR013525 GO:0016020|GO:0140359
Sebi56g00067 1027 SMART AAA_5 657 844 IPR003593 GO:0016887
Sebi56g00067 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 856 IPR027417 -
Sebi56g00067 1027 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 627 865 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi56g00067 Sebi-Chr56 1292960 1312142 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi56g00067 651 859 Calmodulin-binding Proteins AT2G36910 23.529 1.38e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi56g00067 K05643 - gmx:100803263 1725.29