Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi56g00064 ATGGGAACTGCGTGGAGGCAGTTGAAGGTTATGCTCAGGAAGAACTGGCTCCTCAAAATTCGTCACCCTTTCGTTACTGCCGCTGAGATTTTGCTCCCCACGATCGTGTTGTTGCTATTAGTAGCTGTAAGGACACGGGTGGATACACAAATTCATCCAGCTCAATCGCACATTAAAAAAGATATGTTTGTAGAAGTGGGGAAAGGTATATCCCCTAACTTCCAAAAGGTTTTGGAATCCTTGTTGGATAAGGGAGAGTATTTAGCTTTTGCACCGGATACCAATGAGACAAAGCTGATGATAGACGTCGTGTCGATAAAATTTCCGCTCTTGAAGCTTGTTAGTAGAGTATACAAAGATGAGGTAGAGTTGGAAACCTACATCAGGTCATCTGCTTATGGTACCTGCAATCAAGTAAGATTAGGGAAAATACAGCTTGGGAACACCGGGATATCTTCCAAAATGGATGGAATAAAACAAAAAATTCAAAATAACCATATAAAAAATCAGAAATGCAGCAAAGACTTTTCAGCTGCAGATCAAGGTGGGATACTCCCAAGAAAGCTCCAGCAAATGGTTGACTCATTCATAATATTAATAGCTCAGCAGTCTGACTTGAATTCCAGTGCTGAAAGTGCAAAGCTTCCTCTTCCAGGCTTCTATGACACTGATTTCTCCTTGAAAATTCCATGGACTCAGTTTAACCCTGCTCACATACGAATAGCTCCATTTCCCACTCGAGAGTACACTGATGACCAGTTCCAGTCAATCATAAAGAAAGTCATGGGAATATTGTACTTATTGGGGTTTCTCTATCCAATTTCTCGCCTGATTAGTTATTCTGTGTTTGAGAAGGAACAGAAGATTAAAGAGGGACTCTATATGATGGGCCTGAAAGATGGTATATTTCATCTCTCTTGGTTTATTACATATGCTTTGCAGTTTGCAATTTCCTCTGGGGTCATTACAGCTTGCACCATGAATAACTTATTCAAGTATAGCGATAAGACACTGGTGTTTGCATACTTCTTCATTTTTGGGCTTAGTGCAATCATGCTGTCATTTTTTATATCAACGTTTTTCAAACGAGCCAAAACAGCTATAGCTGTTGGAACCCTGTGTTTTCTTGGTGCCTTTTTCCCTTATTACACTGTCAATGACGAGGGAGTTTCTATGATCTTGAAGGTTATTGCTTCTTTGCTTTCACCTACGGCCTTTGCTCTTGGTTCGGTTAACTTTGCTGATTATGAACGTGCTCATGTTGGACTTCGTTGGAGCAACATATGGCGGGAATCATCTGGAGTGAACTTTTTAGCGTGTCTCCTGATGATGATACTTGATACACTGCTATATTGTGCAATTGGACTGTATTTTGATAAGGTTCTTCCGAGGGAGTATGGACTGCGATATCCATGGAGCTTTATTTTCCAAAAGGACTTTTGGAGGAAGAAAAAAATTGTTACACATTGTTCCTCTGGTTTTAAAGTTAAAATTGATGGTAAGAATTCTGAGTCAGAAGGAAATCTTCTAGGGGAAGATACTTTCAAACCCGCTATAGAAGCAATAAGCTTAGACATGAAACAGCAGGAGCTTGATGGCAGGTGCATTCAAATCAGGAATTTGCATAAAGTTTATGCTACTAAAAAAGGAGATTGCTGTGCTGTTAACTCATTACGGCTGACATTGTATGAAAATCAGATTCTTGCTCTTCTAGGACATAATGGAGCTGGGAAAAGCACAACAATCTCAATGCTTGTTGGTCTTCTTCCTCCTACTTCTGGGGATGCTTTGGTTTTTGGAAAGAACATTGTATCGGATATTGATGAGATACGGAAGGTTTTGGGTGTGTGCCCACAACATGATATACTCTTTCCTGAATTGACTGTGAGGGAGCATTTAGAACTATTTGCCATATTAAAGGGTGTGGAGGAAGACTCGCTGGAGGGTGTTGTCTCTAATATGGCTGATGAGGTGGGCCTGGCTGATAAAATTAACAGTCTTGTGAGAGCTCTTTCTGGTGGCATGAAAAGGAAATTGTCTCTTGGAATTGCATTGATTGGAAACAGTAAGGTTATTGTTCTTGACGAACCTACAAGTGGAATGGATCCATACTCAATGCGCTTGACTTGGCAGTTAATAAAAAAAATTAAAAAGGGCAGGATAATTTTGCTAACAACACATTCTATGGATGAAGCAGATGAACTAGGTGACCGGATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGCTCCCTTTTCTTGAAGCATCACTATGGAGTTGGTTATACTCTAACTCTTGTGAAGTCAGCTCCTACTGCTTCTATTGCTGCTGATATAGTATACCGTCATGTTCCATCAGCAACTTGTGTAAGCGAGGTATTCTTCTCATAG 2397 0.4038 MGTAWRQLKVMLRKNWLLKIRHPFVTAAEILLPTIVLLLLVAVRTRVDTQIHPAQSHIKKDMFVEVGKGISPNFQKVLESLLDKGEYLAFAPDTNETKLMIDVVSIKFPLLKLVSRVYKDEVELETYIRSSAYGTCNQVRLGKIQLGNTGISSKMDGIKQKIQNNHIKNQKCSKDFSAADQGGILPRKLQQMVDSFIILIAQQSDLNSSAESAKLPLPGFYDTDFSLKIPWTQFNPAHIRIAPFPTREYTDDQFQSIIKKVMGILYLLGFLYPISRLISYSVFEKEQKIKEGLYMMGLKDGIFHLSWFITYALQFAISSGVITACTMNNLFKYSDKTLVFAYFFIFGLSAIMLSFFISTFFKRAKTAIAVGTLCFLGAFFPYYTVNDEGVSMILKVIASLLSPTAFALGSVNFADYERAHVGLRWSNIWRESSGVNFLACLLMMILDTLLYCAIGLYFDKVLPREYGLRYPWSFIFQKDFWRKKKIVTHCSSGFKVKIDGKNSESEGNLLGEDTFKPAIEAISLDMKQQELDGRCIQIRNLHKVYATKKGDCCAVNSLRLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFAILKGVEEDSLEGVVSNMADEVGLADKINSLVRALSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIAADIVYRHVPSATCVSEVFFS 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi56g00064 798 FunFam ATP-binding cassette sub-family A member 12 528 773 - -
Sebi56g00064 798 Pfam ABC-2 family transporter protein 224 457 IPR013525 GO:0016020|GO:0140359
Sebi56g00064 798 Pfam ABC transporter 556 699 IPR003439 GO:0005524
Sebi56g00064 798 Gene3D - 523 772 IPR027417 -
Sebi56g00064 798 CDD ABC_subfamily_A 536 757 - -
Sebi56g00064 798 ProSitePatterns ABC transporters family signature. 671 685 IPR017871 GO:0005524|GO:0016887
Sebi56g00064 798 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 529 771 IPR026082 GO:0016020|GO:0055085|GO:0140359
Sebi56g00064 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 774 IPR027417 -
Sebi56g00064 798 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 536 769 IPR003439 GO:0005524
Sebi56g00064 798 SMART AAA_5 564 746 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi56g00064 Sebi-Chr56 1232459 1282611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi56g00064 516 762 Calmodulin-binding Proteins AT2G36910 25.097 5.91e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi56g00064 K05643 - gmx:100803263 1347.41