Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi56g00063 ATGGCTTCGTCTTCCTCTGATCCCGGCAAGTCCGCGGAGACTTCGGAAGCAGCGATGGCGAACGATCAGCTTTTACTGTACCGAGGGTTGAAGAAAGCGAAGAAGGAGAGAGGTTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCTTGTGCCGCCGGCAAGCGGAGCTCCATCTACCGCGGTGTCACCAGACATAGATGGACTGGTCGTTATGAAGCGCATCTTTGGGATAAAAGTACATGGAACCAAAATCAGAATAAGAAAGGAAAACAAGTTTACTTGGGGGCGTATGATGACGAGGAAGCAGCGGCTAGAGCGTATGACCTTGCTGCTCTGAAATACTGGGGTCCTGGGACTCTTATTAACTTTCCAGTGACTGATTATACAAGAGATCTCGAAGAAATGCAGAATGTTTCTAGAGAAGAATACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCAAGAGGACTATCAAAATATCGTGGACTCTCCAGTCGATGGGAGCCATCATATGGCCGTATGGCTGGATCTGATTACTTCAGTAGTATACATTATGGTGCAGGGGATGATTCGGCAGCAGAAAGTGAATATGTAAGTGGTTTCTGCATAGAAAGAAAGATTGATTTAACAAGTCACATCAAATGGTGGGGATCTAATAAGAGTGGAACAAGATTATCAGAAGAAAAGAAACATGGTTTTGCTGGGGATATTTGCAGTGAACTGAAAACATTGGAACAGAAAGTCCAACATACAGAGCCATACCAGATGCCAGAGTTAGGAAGGCCCCATAATGAGAAAAAGCATAGTAGTTCTTCAGTCTCTGCCTTAAGTATATTGTCTCAATCTGCTGCTTACAAGAGCTTGCAAGAGAAAGCGTCAAAGAGACAGGAAAATAGTGCTGAGAATGATGAGAATGAAAACAAAAATACAGTCAATGAATTGGATCATGGAAAGGCGGTTGAGAAACCATCAAATCATGATAGTGGCAATGACCGACTTGACAGTGCAATGGGAATGAGTAGGACACTGTCTCTTCAAAGAAATGTTTACCCTTTGACACCATTCTTGTCTGCACCACTTCTGACAGCCTACAATACTGTTGATCCATTGGTAGATCCTGTTCTCTGGACATCATTAGTTCCTATATTTCCTGCTGGTCTGTCTCGTACAACTGAGGTTGGTAAAATGACTTAA 1200 0.4375 MASSSSDPGKSAETSEAAMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWEPSYGRMAGSDYFSSIHYGAGDDSAAESEYVSGFCIERKIDLTSHIKWWGSNKSGTRLSEEKKHGFAGDICSELKTLEQKVQHTEPYQMPELGRPHNEKKHSSSSVSALSILSQSAAYKSLQEKASKRQENSAENDENENKNTVNELDHGKAVEKPSNHDSGNDRLDSAMGMSRTLSLQRNVYPLTPFLSAPLLTAYNTVDPLVDPVLWTSLVPIFPAGLSRTTEVGKMT 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi56g00063 399 ProSiteProfiles AP2/ERF domain profile. 59 125 IPR001471 GO:0003700|GO:0006355
Sebi56g00063 399 Pfam AP2 domain 59 117 IPR001471 GO:0003700|GO:0006355
Sebi56g00063 399 PRINTS Ethylene responsive element binding protein signature 107 127 IPR001471 GO:0003700|GO:0006355
Sebi56g00063 399 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Sebi56g00063 399 Gene3D AP2/ERF domain 59 127 IPR036955 GO:0003700|GO:0006355
Sebi56g00063 399 SMART rav1_2 59 131 IPR001471 GO:0003700|GO:0006355
Sebi56g00063 399 MobiDBLite consensus disorder prediction 289 337 - -
Sebi56g00063 399 SUPERFAMILY DNA-binding domain 58 126 IPR016177 GO:0003677
Sebi56g00063 399 Coils Coil 295 315 - -
Sebi56g00063 399 MobiDBLite consensus disorder prediction 292 331 - -
Sebi56g00063 399 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 300 - -
Sebi56g00063 399 FunFam AP2-like ethylene-responsive transcription factor 58 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi56g00063 Sebi-Chr56 1194841 1197369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi56g00063 20 395 AP2-EREBP Transcription Factor Family AT2G41710 67.526 9.71e-166 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sebi56g00063 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi56g00063 K09285 - gmx:100786651 709.138