Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi56g00043 ATGACTCAGAACCATGTTGGCAGTATATACAATAGAATATCCTCAGCCTTGAATCCTATTTATAGATCATGTATCCTAAGCCATGAGGTGTTGAGAGACAATGATGTTGATGCAGCAAAGTTGGTAGATAATGAGGGTTTACAAGCTATCCACAAATTTGAAAAGATCATCACAGCATCACAGGCACATGCAAATCAAACTTTGCCTCTGCCTCGTGATTTTGTTAAGAACTTTTTGAAGGAAGAGTGGGATAGCCTTGTCATTAGGGTAGATGACCGTTGGAATTATTCATGCAAACTTGTTTGGTCTAGTCGTTCCATTTTGAAAGATGAGTGTCACCTTGGCAAAGGATGGTGTACCTTCGTGAAGGAAATGGGGCTTCGCAGTGGAGACAAAGTCCTTTTCCGCACCATTGACAATAATGTCATAAGAGTAAAATGGCTTCTTAGTCACACTCTTACTCTTCACCTAATGGTGGCAATGTCAATGTTGATGGGAGGTTATGCTTGTGTGGGCGTATTTCCTCAGTTAGGACTTCCTGGACTACCAGGAACTATGGCCGTAAATTTTATGTCTGCTCGCTTAGTCTGA 591 0.4146 MTQNHVGSIYNRISSALNPIYRSCILSHEVLRDNDVDAAKLVDNEGLQAIHKFEKIITASQAHANQTLPLPRDFVKNFLKEEWDSLVIRVDDRWNYSCKLVWSSRSILKDECHLGKGWCTFVKEMGLRSGDKVLFRTIDNNVIRVKWLLSHTLTLHLMVAMSMLMGGYACVGVFPQLGLPGLPGTMAVNFMSARLV 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi56g00043 196 CDD B3_DNA 51 141 IPR003340 GO:0003677
Sebi56g00043 196 Pfam B3 DNA binding domain 53 140 IPR003340 GO:0003677
Sebi56g00043 196 SMART B3_2 53 151 IPR003340 GO:0003677
Sebi56g00043 196 SUPERFAMILY DNA-binding pseudobarrel domain 51 147 IPR015300 -
Sebi56g00043 196 Gene3D - 36 149 IPR015300 -
Sebi56g00043 196 ProSiteProfiles B3 DNA-binding domain profile. 53 151 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi56g00043 Sebi-Chr56 855083 856525 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi56g00043 B3 7.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi56g00043 - K04728 lja:Lj4g3v1330190.1 72.0182