Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi56g00040 ATGGAAATTCTGTGCTTGTTGCATCTTCTGCTAGCTTGGTATGTGTCAAATTGTGAGCTTGTGGGTGCTGAGTTCCAGGACCAAGCTATATTACTTGTCATCAACCAAGAGCTTAGAGTTCCTGGATGGGGTGATGCCAACAACACAAATTACTGCACTTGGCAAGGAGTAAGCTGTGGTAATCATTCAATGGTGGAGAAGCTTGATCTCGCTCACAAGAATCTTCGAGGTAATATCCCTGCTGATCTCAAAGGAATGTTGAGCTTGATAGAGGTGAACTTCTCAAATAATCAGTTTGGAGGTCCTGTACCAACTTTTGTACCATTCCAGAAAAGTCCTAGTTCAAGTTTTCTGGGCAATAAAGGACTTTGTGGAGAGCCATTGAACTCTACATGTGGAGATCTTTATGATGATCACAAGAGTTACCATCACAGGGTTTCTTACAGAATCATACTGGCTGTAATTGGTTCTGGTTTGGCAGTTTTTATGTCAGTAACTGTAGTTGTCTTGCTGTTTATGCTCAGAGAGAGGCAAGAAAAAGTAGCCAAAGATGCTGGGATTGTTGATGATGCAATCAATGACAAACCAACTATAATAGCAGGAAGTATTTTTGTTGATAATCTAAAACAAGCAGTAGACCTTGATGCTGTTGTTAAAGCAACTCTGAAGGACTCAAATAAGCTTAGCAGTGGAACTTTCAGCACAGTTTACAAGGCAATTATGCCTTCTGGGGTGGTCTTATCTGTTAGGAGACTGAAGTCCATAGACAAGGCAATAATCCACCACCAGAACAAGATGATTAGAGAGCTTGAAAGGCTGGGAAAAGTCTGTCATGATAATCTAGTGCGGCCGATTGGTTATGTTATTTATGAAGATGTTGCTCTTCTCTTGCATAATTATTTTCCAAATGGAACATTGGCTCAACTTCTTCATGAATCTACCAGGCAACCTGAATATCAGCCTGACTGGCCTGCTAGGCTATCCATTGCCATTGGAGTGGCAGAAGGTTTAGCTTTCCTTCATCATGTGGCAATTATCCATCTTGACATTTCTTCTGGCAATGTTCTTTTGGATGCAAACTTCAAGCCATTGGTTGGGGAGATTGAGATTTCAAAACTTTTGGATCCAACCAAAGGCACTGCAAGTATTAGTGCAGTTGCTGGTTCCTTTGGTTACATACCCCCAGAATACGCGTACACAATGCAAGTCACAGCACCAGGAAATGTTTACAGCTATGGTGTTGTCCTGTTGGAAATCCTCACAACACGACAACCGGTTGACGAGGATTTTGGTGAAGGTGTAGATTTGGTGAAGTGGGTTCATAGTGCTCCAGTGAGAGGTGAAACTCCAGAGCAGATACTGGATGCAAGGCTTAGCACAGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCTGCTCTGAAGGTTGCACTGCTTTGCACTGACAATACACCAGCCAAACGACCAAAAATGAAGAATGTAGTAGAAATGCTTCGAGAGATAAAGCAAAACTGA 1512 0.4213 MEILCLLHLLLAWYVSNCELVGAEFQDQAILLVINQELRVPGWGDANNTNYCTWQGVSCGNHSMVEKLDLAHKNLRGNIPADLKGMLSLIEVNFSNNQFGGPVPTFVPFQKSPSSSFLGNKGLCGEPLNSTCGDLYDDHKSYHHRVSYRIILAVIGSGLAVFMSVTVVVLLFMLRERQEKVAKDAGIVDDAINDKPTIIAGSIFVDNLKQAVDLDAVVKATLKDSNKLSSGTFSTVYKAIMPSGVVLSVRRLKSIDKAIIHHQNKMIRELERLGKVCHDNLVRPIGYVIYEDVALLLHNYFPNGTLAQLLHESTRQPEYQPDWPARLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRQPVDEDFGEGVDLVKWVHSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLREIKQN 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi56g00040 503 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 59 502 - -
Sebi56g00040 503 Pfam Protein tyrosine and serine/threonine kinase 225 497 IPR001245 GO:0004672|GO:0006468
Sebi56g00040 503 Gene3D Transferase(Phosphotransferase) domain 1 301 503 - -
Sebi56g00040 503 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 192 300 - -
Sebi56g00040 503 CDD STKc_IRAK 228 500 - -
Sebi56g00040 503 SUPERFAMILY Protein kinase-like (PK-like) 222 500 IPR011009 -
Sebi56g00040 503 ProSitePatterns Tyrosine protein kinases specific active-site signature. 345 357 IPR008266 GO:0004672|GO:0006468
Sebi56g00040 503 ProSiteProfiles Protein kinase domain profile. 222 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi56g00040 503 Gene3D Phosphorylase Kinase; domain 1 192 300 - -
Sebi56g00040 503 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 301 503 - -
Sebi56g00040 503 Gene3D Ribonuclease Inhibitor 60 140 IPR032675 -
Sebi56g00040 503 SUPERFAMILY L domain-like 50 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi56g00040 Sebi-Chr56 791445 794206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi56g00040 68 502 Receptor kinase-like Gene Family AT2G41820 75.744 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi56g00040 PK_Tyr_Ser-Thr 2.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi56g00040 - - gmx:100805933 810.061