Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi56g00035 ATGGGGACTCCTGAATTCCCAGATCTAGGCAAGCATTGTTCTGTCGTTGATTGCAAGCTCCTTGATTTCTTACCTTTCACATGCGATCGTTGTAATCAGGTATATTGTTTGGAGCACCGAAGTTATATTAAGCATAAGTGCACAAAAGCCAACAAACTAGATGTCACAGTTGTTATATGTCCACTTTGTGCTAAAGCAGTTCGCCTAATTCCAGATCAAGATCCAAACATAACTTGGGAGCATCATGTTAACATTGACTGTGACCCATCAAATTATGATAAAGTAACAAAGAAGAGAAAATGCCCGGCCCCTGGATCCGAAGCAGGCATGTCAAAATTGAGTGGTGAAATTAACCAAGCATGGCAAACAGCATGGGATGGGGTAGGACAAAGCAGTGGCAGTGGAAATTATCAAGTGGAGCAATGCCCTCGGTGTGGTGCAAAGTTTTCCTCAGTCACTACTTTGGTGGATCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACATATCTAGAGCAAAGAAGGTGGCGATTGATGCATGTCCTAGGTGTAGTAAAGGATTTGTAGACCCGATTTCCCTTGTGGAACATGTTGAGAGGGATCATGGTGGTAGTTATAAAGCATAG 624 0.4279 MGTPEFPDLGKHCSVVDCKLLDFLPFTCDRCNQVYCLEHRSYIKHKCTKANKLDVTVVICPLCAKAVRLIPDQDPNITWEHHVNIDCDPSNYDKVTKKRKCPAPGSEAGMSKLSGEINQAWQTAWDGVGQSSGSGNYQVEQCPRCGAKFSSVTTLVDHVQKVHERSGNISRAKKVAIDACPRCSKGFVDPISLVEHVERDHGGSYKA 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi56g00035 207 ProSitePatterns Zinc finger C2H2 type domain signature. 180 201 IPR013087 -
Sebi56g00035 207 Gene3D Classic Zinc Finger 116 204 - -
Sebi56g00035 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 168 IPR013087 -
Sebi56g00035 207 SMART c2h2final6 178 201 IPR013087 -
Sebi56g00035 207 SMART c2h2final6 140 163 IPR013087 -
Sebi56g00035 207 Gene3D - 2 56 IPR035896 -
Sebi56g00035 207 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Sebi56g00035 207 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Sebi56g00035 207 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Sebi56g00035 207 ProSitePatterns Zinc finger C2H2 type domain signature. 142 163 IPR013087 -
Sebi56g00035 207 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Sebi56g00035 207 Pfam C2H2-type zinc finger 141 163 - -
Sebi56g00035 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 206 IPR013087 -
Sebi56g00035 207 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Sebi56g00035 207 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi56g00035 Sebi-Chr56 721762 722969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi56g00035 1 207 C2H2 Transcription Factor Family AT3G57480 44.400 7.03e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi56g00035 zf-AN1 9.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi56g00035 - - gra:105786241 272.322