Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi56g00017 ATGTGCTGTGAGTTGGAGCGGTTAAAGCAGCCTGCACCGTCTCCATCACTTTCTCCTATTTCAATACGCACATCTCAACCCAGAAACCACATGATGAATCACTTTTCTGTTGACACTGATGATTCTTTTGCAAGCCTGCTTGAGCTTGCAGCCAATAATGATGTTGAAGGCTTCAAACGATTGATTGAGTGTGATCCTTCCTCTGTAGATGAGGTTGGGCTATGGTATGGTCGTCGTAAGGGATCAAAGCAGATGGTCAATGAGCAAAGAACACCTTTGATGGTTGCTGCTACCTATGAGCACTGCCCTCACTGTGCGGCGTCCGGTGGGGCTGAAAATGCTGTTGATGCTGTGAAACTGCTTCTGGCAGCAGGGGCTGATCCAACTTCTGTGGATGCCAATGGGAATCGTCCTGCTGATGTTATTGTTTCTCCTCCCAAGCTTGAATATGTCCGAAACAGTCTTGAAGACCTTCTTCAAACTGATGATTCTATTGGTAGGTGTAATCTTAGAGTGATCACAACTTTGTCAAATGCATATTCTCCGCCTTTATCAACTTCACCTGAGAACGGGTCTCCTTCTGCACAAGATCTCCAGTTGAAGTTAAAGTCAAATGATGTTCCTGTTCGACCTTGTTCACGTGCTTATTCACATGATTGGACTGAGTGCCCTTTTGTTCATCCAGGGGAGAATGCTCGAAGAAGGGACCCGAGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGATTTTCGTAAGGGTGCTTGCCGGCGAGGAGATATGTGTGAATATGCTCATGGGGTTTTTGAGTGCTGGCTACATCCAGCACAATATCGAACCCGTCTCTGCAAGGATGGGACAAATTGCGCAAGGAGAGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTGAGACCGTTATATGTTTCAACTGGTTCTGCTGTTCCATCTCCTCGATCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCCCCTTCCTCAATGTCTGTCATCTCTCCTTCACCATTCACTCCGCCCATGTCACCTTCTGCCAATGGCATTTCACACAATTCTGTTGCTTGGCCCCAGCCAAACATCCCAGCATTACATCTTCCAGGAAGTAATCTTCAGTCTAGTCGATTGAGAGCTTCACTCAATGCTAGAGATATTCCTGCAGATGATTTTGACTTGTTATCTGAATATGATCAACAGCAACAGCTCCTTAATGAGTTGTCTTGCCTCTCTCCACAGCCTATGAATTCTAATACTTTGAACCGCTCTGGTCGTATGAAACCACTGACTCCATCAAATCTTGATGATCTCTTTTCTGCCGAGAGTTCTTCTCCTCGATATGCTGATCCAACACTGACTTCAACAGTTTTTTCTCCAACTCACAAATCAGCTGCCTCTTTTGGGGTTCAGGGATCAGGAAGAATGTCTCCACGAAATGTGGAACCTATTTCTCCAATGAGCTCTAGGATTTCTATGCTAGCTCAACGTGAAAAGCAGCAACAATTTCGAAGCCTAAGCTTCCGGGAAGTGGATTGGGCTGTCAGTGCAGATGAATTAGGTAAGCTCCGCAGATCATCTTCATTTGAGCTTGGGAACACTGGTGAGGAACCTGATTTATCATGGGTGCAGTCACTTGTTAAAGAATCTCCAACTGAGATTAAAGAGAAATTGGCAACTACTGTCTCAAGTGTTACAGCAGCTGGATCCTCTAGCGAGGGATTAAATGTGAGCACACCAATGGAGTCCGTTGATCATGCTGTACTGGGAACATGGCTTGAACAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 1845 0.4591 MCCELERLKQPAPSPSLSPISIRTSQPRNHMMNHFSVDTDDSFASLLELAANNDVEGFKRLIECDPSSVDEVGLWYGRRKGSKQMVNEQRTPLMVAATYEHCPHCAASGGAENAVDAVKLLLAAGADPTSVDANGNRPADVIVSPPKLEYVRNSLEDLLQTDDSIGRCNLRVITTLSNAYSPPLSTSPENGSPSAQDLQLKLKSNDVPVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCARRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVISPSPFTPPMSPSANGISHNSVAWPQPNIPALHLPGSNLQSSRLRASLNARDIPADDFDLLSEYDQQQQLLNELSCLSPQPMNSNTLNRSGRMKPLTPSNLDDLFSAESSSPRYADPTLTSTVFSPTHKSAASFGVQGSGRMSPRNVEPISPMSSRISMLAQREKQQQFRSLSFREVDWAVSADELGKLRRSSSFELGNTGEEPDLSWVQSLVKESPTEIKEKLATTVSSVTAAGSSSEGLNVSTPMESVDHAVLGTWLEQMQLDHLVAQQN 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi56g00017 614 ProSiteProfiles Zinc finger C3H1-type profile. 246 268 IPR000571 GO:0046872
Sebi56g00017 614 Gene3D - 30 187 IPR036770 -
Sebi56g00017 614 Gene3D - 241 304 - -
Sebi56g00017 614 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 246 266 IPR000571 GO:0046872
Sebi56g00017 614 SMART c3hfinal6 276 299 IPR000571 GO:0046872
Sebi56g00017 614 SMART c3hfinal6 241 267 IPR000571 GO:0046872
Sebi56g00017 614 Pfam Ankyrin repeat 90 132 IPR002110 GO:0005515
Sebi56g00017 614 SUPERFAMILY Ankyrin repeat 46 156 IPR036770 -
Sebi56g00017 614 PANTHER UNKEMPT FAMILY MEMBER 48 558 IPR045234 -
Sebi56g00017 614 FunFam Zinc finger CCCH domain-containing protein 242 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi56g00017 Sebi-Chr56 253197 255398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi56g00017 36 607 C2H2 Transcription Factor Family AT5G12850 43.696 3.13e-176 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi56g00017 Ank 0.0012 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi56g00017 - - ccaj:109796653 978.008