Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi56g00006 ATGGATACTTGCAAGAAGTCTCCCTTGAAGCCATGGAAGAAAGGGCCAACCAGGGGAAAAGGTGGCCCCCAGAATGCTTCGTGCGAGTATCGAGGCGTTCGGCAAAGAACATGGGGCAAATGGGTTGCTGAGATTAGAGAGCCTAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCTATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCTCACCTGAAATCCAACTCCAATTCACCTATCAAATCTGGAAAGTTCAAATGGTTGCCTTCCAAGAACTTCATTTCAATGTTTCCTTCTTGTGCATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTTCAAGAGCTTAAGCAGAATGCAGTTGTGAGTAAATCCCTTTCTAGTTCATCCAATGATCCAAAGGCAGAAGAAATTCAGAATCATGCAGAAAATCCTCCAAAGGAAAAAGATACTCAGACATCACCACAGGAGATGCTTGGAGATCATCAGGAGAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAGCTGGGAATACTGAAAGAAGAAAGACAGTCAGAAAGAACTGATAGCTCAGGAAGTTCAACAGTGCCTGAAGCTGTGTCAAGAGATGATAATGATCAACTGGGATTGTTTTATGACAAGAGTGTTAACTGGGAGGCATTGATTGAGATGCATGGAATTGATGGTATTCAGGAATCAGGAGCCACCCAGCTTGAAGCATATGACCTGAATGATGAGCTTACTTTCTCAACTTCCATTTGGAACTTTTAA 837 0.4325 MDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLKSNSNSPIKSGKFKWLPSKNFISMFPSCALLNVNAQPSVHLIHQRLQELKQNAVVSKSLSSSSNDPKAEEIQNHAENPPKEKDTQTSPQEMLGDHQEKPQIDLHEFLQQLGILKEERQSERTDSSGSSTVPEAVSRDDNDQLGLFYDKSVNWEALIEMHGIDGIQESGATQLEAYDLNDELTFSTSIWNF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi56g00006 278 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Sebi56g00006 278 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Sebi56g00006 278 MobiDBLite consensus disorder prediction 157 171 - -
Sebi56g00006 278 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Sebi56g00006 278 MobiDBLite consensus disorder prediction 202 224 - -
Sebi56g00006 278 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Sebi56g00006 278 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Sebi56g00006 278 MobiDBLite consensus disorder prediction 145 184 - -
Sebi56g00006 278 MobiDBLite consensus disorder prediction 1 28 - -
Sebi56g00006 278 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Sebi56g00006 278 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 241 - -
Sebi56g00006 278 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Sebi56g00006 278 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Sebi56g00006 278 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi56g00006 Sebi-Chr56 105345 106181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi56g00006 5 278 AP2-EREBP Transcription Factor Family AT3G57600 53.069 7.67e-91 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi56g00006 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi56g00006 - - gmx:100801311 461.455