Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi56g00005 ATGGAGAGAGGAACCACTAAGAAGAAAGCATCACCTCTCTCTTTGCAGCAATTCATCTCTATTACTACTCCTCTTCTTGACTTGGAAAAGGAAGCTGAGATATCGAGTTCAATCGCCACAGGCGCGTCTAGGAATTTGGATACTGCTCAAAAGAAGGGTTCCACAATCCTCAACTTGAAGTGTGTGGATGTTCAGACAGGGCTTATGGGGAAGTCTCTGATCGAGTTCCAGTCTACAAAAGGAGATGTACTTCCTGCACACAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAATAAGGCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTAGTTTACAGGTTAAAGGACTCGTCAATTACTGTTGCTTTTGATGATATACCAGAAGATGGTTTAAACAGTCCCCTAAGACTGGAAAAAGTAGCAAATGAGGTTACATATCGAAGGATGAAAGATGCATTAATACAGTTGAGTAAAGGAGTGCACAAGGGTCCTGCTGCTGATCTAATTCCTGTCTTGTTTGGGGAGAGGTCACCAACAGTGTCCAAGAAGGATATATCCTTCACTCCCTTTAACAAGAATCTTGATCACTCTCAGAAAGATGCGATTTCCAAAGCCCTATCGTCAAAAAATGTGTTCTTGCTACATGGACCTCCTGGAACGGGAAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTAAAACGTGGATCTAAAATTCTTGCTTGTGCTGCCTCAAATATTGCTGTTGACAACATTGTTGAGCGGCTAGTTCCACACAGAGTTAAGCTGGTGAGAGTGGGTCATCCTGCACGTTTATTGCCTCAAGTACTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTGCTGAAAACCAAAGACAGAAATACAAGGAGGGACATACAGAAGGAACTTAGGACTCTATCCAAAGAAGAGCGTAAAAGGCAGCAGCTTGCTGTGACAGATGTAATTAAAAGTGCAGATGTAATATTGACTACTCTGATTGGGGCTTTCTCTAAGAAACTAGACATCACTTCATTTGATTTGGTTATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCACTGCTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTCCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGATTAGGAAGAACCCTCTTTGAACGACTTGCAGAAATGTATGGAGATGAAGTCACATCCATGCTTACTGTCCAGTACCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATACAAGTGTTGCTGCACATATGCTATATGATCTCGAGGATGTAAAGAGGACATCTTCAACTGAACCAACCCTCCTTCTCATAGACACAACTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCTCGCTTAATGAAGGTGAGGCTGAGGTTGCTATGGCTCATGCAAAGAGATTAGTGCAAAGTGGGGTGCTTCCTTCTGATATTGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTGCTCAAGATGTTGAAGAACAAGGAGGGCAAGCTGAAAGATATCGAAATTTCAACAGTTGATGGCTTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAGAAAGAGGTGGGCTTTCTAAGTGATCGCCGGCGAATGAACGTGGCTGTGACACGGGCAAGAAGGCAATGTTGTCTTGTCTGTGACACTGAGACAGTCAGTAGTGATGGATTTCTAAAGCGATTGATTGAGTATTTTGAAGAGCATGGTGAATATCAGAGTGCATCTGAGTACCAGAATGAGTAG 1944 0.4223 MERGTTKKKASPLSLQQFISITTPLLDLEKEAEISSSIATGASRNLDTAQKKGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPAADLIPVLFGERSPTVSKKDISFTPFNKNLDHSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRVGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRRDIQKELRTLSKEERKRQQLAVTDVIKSADVILTTLIGAFSKKLDITSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEVTSMLTVQYRMHELIMDWSSKELYNSKIKAHTSVAAHMLYDLEDVKRTSSTEPTLLLIDTTGCDMEEKKDEEDSSLNEGEAEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEGKLKDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHGEYQSASEYQNE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi56g00005 647 Coils Coil 298 318 - -
Sebi56g00005 647 Gene3D - 41 143 - -
Sebi56g00005 647 FunFam P-loop containing nucleoside triphosphate hydrolase 443 647 - -
Sebi56g00005 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 632 IPR027417 -
Sebi56g00005 647 CDD SF1_C_Upf1 445 633 IPR047187 -
Sebi56g00005 647 CDD DEXXQc_SMUBP2 196 444 - -
Sebi56g00005 647 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 10 646 - -
Sebi56g00005 647 SMART ultradead3 193 444 IPR014001 -
Sebi56g00005 647 Pfam AAA domain 197 411 IPR041677 GO:0004386
Sebi56g00005 647 NCBIfam IGHMBP2 family helicase 345 642 IPR004483 GO:0003677|GO:0005524
Sebi56g00005 647 Gene3D - 443 647 IPR027417 -
Sebi56g00005 647 FunFam DNA-binding protein SMUBP-2 41 143 - -
Sebi56g00005 647 Gene3D - 23 427 IPR027417 -
Sebi56g00005 647 Pfam AAA domain 420 616 IPR041679 -
Sebi56g00005 647 SMART AAA_5 211 463 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi56g00005 Sebi-Chr56 97051 103853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi56g00005 170 380 Core DNA Replication Machinery Family AT1G08840 28.436 6.28e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi56g00005 - K19036 gmx:100810545 1174.07