Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi567g00023 ATGGTAACTGGACAGTTTAAATTTAGTAATGGACGGGGTTATACATATTTGGATGGTGCATCAGAGTTCTCTGTTGAGGAGGATCTGGATGGTGTAGTCCCTGATGTTAAGGTGCATTTGGCTAAGGTGGAAAGGGATTGTAGGATTTTCAATCTCAGCATGGATATGACCAACCATGAATCTGGGACCCCCATTGAGCTGGGATGTTCTTGCAAGGATGTTTTGGCTGCTGCTCACAAACAATGTGCTGAGGCTTGGTTTAAGATCAAGGGCAACAAGGACCAGTGTGCTCACTTACTCATTCCTCTCAACAAATGCAGGAAAGCTGAGTTCTATCTCCCATGGAAGTGCGAGAATGAGCGCCACTCCTATGAGAAGTGCGAGTACGAGCTTGTCATGGAGAGGATGCTTTAG 414 0.4589 MVTGQFKFSNGRGYTYLDGASEFSVEEDLDGVVPDVKVHLAKVERDCRIFNLSMDMTNHESGTPIELGCSCKDVLAAAHKQCAEAWFKIKGNKDQCAHLLIPLNKCRKAEFYLPWKCENERHSYEKCEYELVMERML 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi567g00023 137 SMART ringv_2 46 97 IPR011016 GO:0008270
Sebi567g00023 137 Pfam NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7) 91 136 IPR008698 GO:0005739
Sebi567g00023 137 Pfam RING-variant domain 58 97 IPR011016 GO:0008270
Sebi567g00023 137 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 93 135 - -
Sebi567g00023 137 PANTHER NADH:UBIQUINONE OXIDOREDUCTASE B18-LIKE SUBUNIT 94 137 IPR008698 GO:0005739
Sebi567g00023 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 135 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi567g00023 Sebi-Chr567 660185 660758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi567g00023 20 93 C3H Transcription Factor Family AT5G05830 66.216 7.10e-27 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi567g00023 - - csav:115706331 125.176