Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi567g00017 ATGGAAACAAAATCTTCCTCATCTTCTTCTAATGTTGCAACTACAACTACCACTGTTGAATCTTCTTTGTTGTTCTTGATGCAAGATGTTGACAAAGACTCCACTGCAAAATTGGAGTGTAAATCATCACCGAACTCTTTCATTGTTGGAAGCTTTGAATTGATTCAAGTGCAACATCAAACTCCTGTGGCCGTGTCGGCTCCTTCGAATGGTGTGGATCCTGCTCTGAACGATGCGCAGAAGATGTTTGATGAAATGTTCAAGACGCAAAAATTCATCGCTGATGGTGTTTTCTTCGTTGAACTGAACGAGGTTCTAACTAGAGAGCTCGTCGGGGATGGTTACTCTGGTGTGGAGGTCAGGGTTACCCCGGTGCGCACAGAAATCATCATCAAAGCCACTCGAACGCAGGCTGTTCTTGGTGAGAAGGGAAGGAGAATTAGGGAACTTGCCTCAGTGATGAGTCTCTCCGCTACGTACAAGATCTTTGGTGGCCTTGCTGTAAGGAGGGCCTGCTATGGTGTTTTGAGATTTGTTATGGAAAGTGGTGCCAAGGGATGTGAGGTCATTGTCAGTGGAAAATTGAGCCCAGAGAGCAAAATTCGTGAAGTTCAAGGATGGGGAGCATGTGTGGTGGAGGTTGCTGAACGTACTGCTTCCTTGATTGTAAGATGTCAGGGGGTTGGTTTCACTCATGGTGTGATGAACATGGATAACATGGGCATTCTGTCTCACTATTGA 741 0.4561 METKSSSSSSNVATTTTTVESSLLFLMQDVDKDSTAKLECKSSPNSFIVGSFELIQVQHQTPVAVSAPSNGVDPALNDAQKMFDEMFKTQKFIADGVFFVELNEVLTRELVGDGYSGVEVRVTPVRTEIIIKATRTQAVLGEKGRRIRELASVMSLSATYKIFGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLSPESKIREVQGWGACVVEVAERTASLIVRCQGVGFTHGVMNMDNMGILSHY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi567g00017 246 SUPERFAMILY Ribosomal protein S3 C-terminal domain 156 199 IPR036419 -
Sebi567g00017 246 Gene3D - 78 161 IPR015946 -
Sebi567g00017 246 CDD KH-II_40S_S3 88 153 - -
Sebi567g00017 246 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 90 153 - -
Sebi567g00017 246 FunFam 40S ribosomal protein S3 82 162 - -
Sebi567g00017 246 Pfam KH domain 101 151 IPR004044 GO:0003723
Sebi567g00017 246 Pfam Ribosomal protein S3, C-terminal domain 161 202 IPR001351 GO:0003735|GO:0006412
Sebi567g00017 246 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 91 155 IPR009019 GO:0003723
Sebi567g00017 246 Pfam Protein adenylyltransferase SelO 211 243 IPR003846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi567g00017 Sebi-Chr567 515314 516302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi567g00017 82 195 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 63.380 1.35e-53 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi567g00017 K02985 - egt:105958590 167.548