Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi566g00007 ATGCTACTGGAGGTAGCTTTTGGTAGTCGTAGAGTTGCAGTAGAAAATCGAGCCACATTCCCACCACTGTCAATTCCTACAACAAATTTGCAAAGGGGTGGAGTTAAGCCACTTTCAGGAAAACCATACTATCATGTGGTTCTTTCAAAATCACATGTTAGTCCTCCTTATGTAATGGGGCCGTCTGCCAAGTTATACTCAAAACTTCCTTCTCAAGTGGTCCCTACTGTTCTCAAATATGGAGGCAAGAGCTGGAAAATGACTTATAATGGACAAAGCACAGATCGCAAGAGGTTTACTTGCAAAGGCTGGGGAAAATTTGTTGAAGATAATTGTTTGAAGGTTGGAGACGCATGCATCTTTGAGCTCATGGAAAAGAGTACTGAAGAGAAAGTCATCTTCCAAGTTCAAATTCTTAGAGGTGACCTCCCATTCAAATTTCATGAAATTGGTGAGAGTGCAGAAAACCCAATTGTCTTTTGA 483 0.4099 MLLEVAFGSRRVAVENRATFPPLSIPTTNLQRGGVKPLSGKPYYHVVLSKSHVSPPYVMGPSAKLYSKLPSQVVPTVLKYGGKSWKMTYNGQSTDRKRFTCKGWGKFVEDNCLKVGDACIFELMEKSTEEKVIFQVQILRGDLPFKFHEIGESAENPIVF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi566g00007 160 CDD B3_DNA 42 140 IPR003340 GO:0003677
Sebi566g00007 160 SMART B3_2 44 137 IPR003340 GO:0003677
Sebi566g00007 160 Pfam B3 DNA binding domain 74 134 IPR003340 GO:0003677
Sebi566g00007 160 SUPERFAMILY DNA-binding pseudobarrel domain 40 131 IPR015300 -
Sebi566g00007 160 Gene3D - 35 142 IPR015300 -
Sebi566g00007 160 ProSiteProfiles B3 DNA-binding domain profile. 82 142 IPR003340 GO:0003677
Sebi566g00007 160 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 41 148 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi566g00007 Sebi-Chr566 90844 92111 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi566g00007 B3 6.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi566g00007 - - tpra:123884363 174.481