Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi565g00005 ATGGAGCGCATCATCGGGGGCAAGTACAAGCTCGGCCGCAAGATCGGAAGCGGATCCTTTGGTGAAATCTATCTTGCTACACATAATGATACATTTGAGATCGTTGCCGTCAAGATTGAGAACGGTAAAACGAAGCATCCACAATTGCTTTACGAGGCTAAGCTCTACAATATTCTCCAAGGAGGAAGTGGCATCCCGGGCATAAGGTGGCGTGGTGTAGACCGGGAGGATAATGTTCTGGTTATGGATTTGCTGGGGCCTAGCCTTGAGGATCTTTTTGTCTACTGTGGAAGAAAGTTCTCCCTTAAAACTGTTTTGATGCTGGCTGATCAAATGATGACCAGAATAGAATATGTGCATTCTAAAGGATTCCTCCATAGGGATATAAAACCTGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCAGGTTTACATAATTGATTTTGGACTTGCAAAACGATATCGGGAATCTGGAACCAATCGCCATATTCCTTACAGGGAGAACAAAAACTTAACAGGAACTGCACGCTATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTCGACGGGATGATTTGGAGTCACTAGGTTATGTGCTTCTGTATTTCCTTAGAGGAAGCCTTCCTTGGCAAAATCTAAAGGCTGCGACAAAGAAGCAAAAGTATGATAAAATATGTGAGAAGAAAGTTTCAACTCCTATTGAGGTATTATGCAAATCTCATCCTCCAGAGTTTGCGTCATACTTCCATTACTGCCACTCTCTGACCTTTGACCAGCGACCTGATTATGGATTCTTGAAACGCCTATTTCGGGAGTTGTTTGCTCGGGAAGGTTATGAATTTGATTATGTGTTTGATTGGACTATTTTAAAGTACCAGCAGGCACAAAATAGTAGAGTCCAGCCTCAGATATCTCCGGTTCCTGGAGCAAGCAACAGTCATGCAATGCCCATGGATGTTGACAACCATCAAGTTATTAGTGCTTATTCAGGCGATGTCTCAGCAGAGCGCATTAAATCAGGCAATGCTACTGGTTCTGGTGTTAAAGTTCAGTTTAAATCACCAGTGGGTAAAAAATTGGATTCTCCTCTTGACAAGAATATTTTTGGTGAAGCAAATATCCCCTCTACTTCATACTCTCTTGCTGGTACCTCAAAAAGGAACTCCTTAAAGCCTGCGTCCAATGAAGCTGCAAACCCTGGACACGGGCAAGGAAGTAGTAAAATTGGCCCCTCAAGTAGCTGGATTTCATCTCTGCAGCGCATATCTTCGGCCAAATGA 1290 0.4333 MERIIGGKYKLGRKIGSGSFGEIYLATHNDTFEIVAVKIENGKTKHPQLLYEAKLYNILQGGSGIPGIRWRGVDREDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRESGTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPPEFASYFHYCHSLTFDQRPDYGFLKRLFRELFAREGYEFDYVFDWTILKYQQAQNSRVQPQISPVPGASNSHAMPMDVDNHQVISAYSGDVSAERIKSGNATGSGVKVQFKSPVGKKLDSPLDKNIFGEANIPSTSYSLAGTSKRNSLKPASNEAANPGHGQGSSKIGPSSSWISSLQRISSAK 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi565g00005 429 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Sebi565g00005 429 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Sebi565g00005 429 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi565g00005 429 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi565g00005 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Sebi565g00005 429 PANTHER CASEIN KINASE-RELATED 8 340 - -
Sebi565g00005 429 Gene3D Transferase(Phosphotransferase) domain 1 1 328 - -
Sebi565g00005 429 MobiDBLite consensus disorder prediction 386 429 - -
Sebi565g00005 429 FunFam Casein kinase I isoform delta-like 1 340 - -
Sebi565g00005 429 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi565g00005 Sebi-Chr565 69229 72876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi565g00005 8 246 MAP Kinase Kinase Kinase AT1G54960 27.953 1.02e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Sebi565g00005 Pkinase 8.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi565g00005 K08960 - gmx:100798768 775.778