Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi564g00019 ATGATGAGAACCCCCTGTTGTGACAAAAATGGACTGAAGAAAGGAACATGGACACCAGAGGAGGACAAGAAGTTGGTTGATTATGTTACTAGATATGGCCACTGGAATTGGCGCCTACTTCCCAAGTTTGCAGGTACCGTGGAAAGCAATTGTTCTATGTTTAGATTTAGATTAACCCCTCCCGCTTTTCGTTCTCACAAACGCAAGTTAATTAACTTTGAATCCATGTTTACTTCTTCATTTATGTTTTGGACTTGCGAGATGCGGAAAGAGTTGCAGACTTGGGTGGCTGAATTACCTAAGGCCAAATGTAAAAGAGGGAACTACACTCAACAAGAGGAGGAAACTATTATCAAGCTCCACCAACTATTGGATAACAGATGGTCTGCCATTGCTGCTGAGATGCCAGGAAGAAGTGACAATGAAATAAAAAACTACTGGCACACCAACCTCAAGAAGCGATTTCAACACAACTCAATAACAGAATCTCAAGTCTCTGATCAGTCAAAGGATGATGACTCCTCAACTGAAACTGCAAACAATTACGTGACTGCAGCTAATACCACCCAAATCGCCGAGACTTCCACATTTTCCCAGCATTCATCCTCCACTGCAAGCACAGAGTGCACCCCTGTTACAACTACCAGCAATGAAAACCTGACTCTGGAAGATGAATTTGCCTTTCTAGATGCAGACAAATTATATGATCCCGTGAGTGAAAGCTTCTGGTTAGAGCCATATATGTTTGACATTAGCTATGTCCCAAGTGAGCCTGAGGATTTTAGCCCAATCTTTGATGTGAACTTTGGAGTCATATATAATAACTAA 828 0.4179 MMRTPCCDKNGLKKGTWTPEEDKKLVDYVTRYGHWNWRLLPKFAGTVESNCSMFRFRLTPPAFRSHKRKLINFESMFTSSFMFWTCEMRKELQTWVAELPKAKCKRGNYTQQEEETIIKLHQLLDNRWSAIAAEMPGRSDNEIKNYWHTNLKKRFQHNSITESQVSDQSKDDDSSTETANNYVTAANTTQIAETSTFSQHSSSTASTECTPVTTTSNENLTLEDEFAFLDADKLYDPVSESFWLEPYMFDISYVPSEPEDFSPIFDVNFGVIYNN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi564g00019 275 Gene3D - 108 182 - -
Sebi564g00019 275 CDD SANT 16 46 IPR001005 -
Sebi564g00019 275 Pfam Myb-like DNA-binding domain 106 151 IPR001005 -
Sebi564g00019 275 Pfam Myb-like DNA-binding domain 14 45 IPR001005 -
Sebi564g00019 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 46 IPR017930 -
Sebi564g00019 275 Gene3D - 7 67 - -
Sebi564g00019 275 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 221 - -
Sebi564g00019 275 MobiDBLite consensus disorder prediction 193 216 - -
Sebi564g00019 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 155 IPR017930 -
Sebi564g00019 275 ProSiteProfiles Myb-like domain profile. 9 51 IPR001005 -
Sebi564g00019 275 MobiDBLite consensus disorder prediction 158 178 - -
Sebi564g00019 275 SUPERFAMILY Homeodomain-like 11 147 IPR009057 -
Sebi564g00019 275 SMART sant 13 60 IPR001005 -
Sebi564g00019 275 SMART sant 105 153 IPR001005 -
Sebi564g00019 275 CDD SANT 108 151 IPR001005 -
Sebi564g00019 275 ProSiteProfiles Myb-like domain profile. 101 151 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi564g00019 Sebi-Chr564 605370 607628 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi564g00019 1 257 MYB Transcription Factor Family AT1G06180 35.798 2.84e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi564g00019 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi564g00019 K09422 - gmx:100778518 250.366