Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi564g00015 ATGGCGAGAACCCCTTCCTGTGACAAAAGTGGATTGAGGAAAGGTACTTGGACTGCTGAGGAAGATCGTAAGTTAATTGCTTATGTCACTCGATATGGCTGCTGGAATTGGCGCCAACTCCCCAGATTTGCAGGTCTGCAAAGGTGTGGGAAGAGTTGCAGATTGAGATGGTTGAATTATCTAAGGCCTAATATCAAAAGAGGGAACTTTACTCAACAAGAAGAGGAATGCATCATCAGAATGCACAAAAAACTGGGCAATAGATGGTCTGCCATTGCGGCTGAGTTGCCTGGAAGAACAGATAATGAAGTAAAGAACCATTGGCATACCACACTCAAGAAGAGAGTTGCAAATGAAAAAGTCAGCAAAGCCTCCAAATCAAAAGATATTGAATCCAAAAGTACCAACAATGATGCTGTTCCTGCTTTTCAAGTTACTCTTCCAACTACTTCCCATATGTCAGAAATCACTGGTCCATTATCTCCTCTATCATCCTCCAGCGAGTTTTCTACAATAACCTCAGATCACACTTCTGCTTCCAGTAATGGAAACTTGTTGCTTGAAGATGATGACTTCAGTTTTCTGGATGCATATATTGGAAGTTTCTGGACAGAGTCATTAATGGCTGATATTTCATCCACTAGTACACAAAGTGAAATAGTACCAGACTATACCAATTGTGCTCTTCAAAATCAAGATGATACCCAGAATAACCTTGATGGTAGTTTATTTTCACCGCACCAATCGTGCAGTGAAAGTTTGGTACTGGAGAATGAGTTTGGCAGTATTCTGGATACATGCACGGAGCCAACAATTGATAATTTTTGGGGACAGCAATATGTGGCCGACATTTGCCACGTTCAAAGTGAAATACTGACACCCTTTGTGGCTGAATCTGAATATTTTTCTACAGTATATGATGCTGAACTTTGGAGTCAAAATAATTTGTATAATCAACATGTTAGCTTATTCCAATGA 978 0.4018 MARTPSCDKSGLRKGTWTAEEDRKLIAYVTRYGCWNWRQLPRFAGLQRCGKSCRLRWLNYLRPNIKRGNFTQQEEECIIRMHKKLGNRWSAIAAELPGRTDNEVKNHWHTTLKKRVANEKVSKASKSKDIESKSTNNDAVPAFQVTLPTTSHMSEITGPLSPLSSSSEFSTITSDHTSASSNGNLLLEDDDFSFLDAYIGSFWTESLMADISSTSTQSEIVPDYTNCALQNQDDTQNNLDGSLFSPHQSCSESLVLENEFGSILDTCTEPTIDNFWGQQYVADICHVQSEILTPFVAESEYFSTVYDAELWSQNNLYNQHVSLFQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi564g00015 325 CDD SANT 69 112 IPR001005 -
Sebi564g00015 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sebi564g00015 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sebi564g00015 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sebi564g00015 325 CDD SANT 16 61 IPR001005 -
Sebi564g00015 325 Gene3D - 69 140 - -
Sebi564g00015 325 SMART sant 13 63 IPR001005 -
Sebi564g00015 325 SMART sant 66 114 IPR001005 -
Sebi564g00015 325 Gene3D - 14 66 - -
Sebi564g00015 325 FunFam MYB-related transcription factor 13 66 - -
Sebi564g00015 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sebi564g00015 325 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Sebi564g00015 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sebi564g00015 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sebi564g00015 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi564g00015 Sebi-Chr564 560293 561699 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi564g00015 1 257 MYB Transcription Factor Family AT1G06180 41.065 1.80e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi564g00015 Myb_DNA-binding 4.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi564g00015 K09422 - gmx:100777107 385.185