Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi564g00012 ATGGTGAGAGCTCCTTATTTTGATGAAAATGGAATAAAAAAAGGTGCATGGAGTGAGGAAGAGGATAAGAGACTTATAGCTTACATTGAGAAACACGGCCATCCTAATTGGCGTCAACTCCCAAAGTTTGCAGGTTTGGCTAGGTGTGGAAAGAGTTGCAGGCTTCGTTGGATGAATTACCTACGACCAAATCTAAAACATGGGAACTACACCCAAGAGGAAGAGCAAATAATCACGGAGTTGCATAAAAAGCATGGAAACAAGTATGGATTTGTCACACTTCTCATAAATCTTCATTCTCTTAGATGGTCTCTGATTGCTGAAAATCTACCTGGCAGAACAGATAATGAGATAAAGAACTATTGGCACAGCAACCTAAAGAAGTTCTCACAGCAGAGCAATGAGATCACAACATCTGATGATGAATTCAAGTCCTCCAAGTGTGCAGATTTTGGAAAGCCATCATCATCAAGCGAGGCTGTTAGTGCTGATTCCCACCACATTTTGGAAAGTTCACTGTCCATGTCCTCGGAAGTGTCCTACACTGAACACAATTCCCCTTCCTTTTCCTCTAATCATTCGGATTCAAACGTGAACTTGTCCAGAGAAGAAGAGAGAGTTGCTTCATGGGAAACATGGGATGGATTCAGCAACAGTTTTTGGACTGAACCGTTTATTTCAGAAAACGCTTTTAGTCAGAATGATTACTTTCCCATTTCATGCTACGGAACAGAGGAAGAGGAACCATTTTTCATATGGTAG 762 0.4121 MVRAPYFDENGIKKGAWSEEEDKRLIAYIEKHGHPNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKHGNYTQEEEQIITELHKKHGNKYGFVTLLINLHSLRWSLIAENLPGRTDNEIKNYWHSNLKKFSQQSNEITTSDDEFKSSKCADFGKPSSSSEAVSADSHHILESSLSMSSEVSYTEHNSPSFSSNHSDSNVNLSREEERVASWETWDGFSNSFWTEPFISENAFSQNDYFPISCYGTEEEEPFFIW 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi564g00012 253 ProSiteProfiles Myb-like domain profile. 62 126 IPR001005 -
Sebi564g00012 253 CDD SANT 16 61 IPR001005 -
Sebi564g00012 253 Gene3D - 7 67 - -
Sebi564g00012 253 SMART sant 66 128 IPR001005 -
Sebi564g00012 253 SMART sant 13 63 IPR001005 -
Sebi564g00012 253 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sebi564g00012 253 Pfam Myb-like DNA-binding domain 68 125 IPR001005 -
Sebi564g00012 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 130 IPR017930 -
Sebi564g00012 253 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 224 - -
Sebi564g00012 253 SUPERFAMILY Homeodomain-like 11 122 IPR009057 -
Sebi564g00012 253 Gene3D - 69 128 - -
Sebi564g00012 253 FunFam MYB-related transcription factor 13 66 - -
Sebi564g00012 253 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sebi564g00012 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Sebi564g00012 253 CDD SANT 69 126 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi564g00012 Sebi-Chr564 437480 438760 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi564g00012 1 128 MYB Transcription Factor Family AT5G16770 60.938 1.16e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi564g00012 Myb_DNA-binding 7.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi564g00012 K09422 - gmx:100781032 348.977