Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi564g00007 ATGTGGGTCATATGTGCAAAGGAAAATCCCTCTAATGTGTTCTCAGTTGAAATGGTTTTGGTAGACGCTAAGGGTGGAAGGATTCAAGCAAGCATTAGGAAAGCAATGCTGAAGAAGTTCATGGGTAACATGGTTGAGGGTGTCGTCTATAAGATGACCTTTTTTGGTGTCATTGACAATCTTGGATCTTATAGGGCAACTACGCATGAGTACAAGTTGTTGTTCCAACCTAGGACCAAGGTTTATCCTGCTGAGAGTGAAATGATATCAAGGTTTGGGTTGGATGTCAAGAGTTCAGAAGAAATTCATCAAACAAGTGGTGATTCTGAATATTTGTTTGATTTCATGGGTGTCTTGACGGCTGTAGGTGAAGAAAAGCAGTATGAAAAGTTCAATAGAACTATAAGGGTACTTGAATTGGAACTGACTGATGACAAGGGTGTTGTTAGGTGCTCATTATTTGGGCATTTCATTGATCTCATGAGAGATTACTTGAAGAATCGTTCTATTGATGAGCTTGATATTGTGGTCATACAATTTGCTAGGCTCAAGAGTTACATGGGTAAGAATTCTTTGCACACCTTGAGTAACTCCATTAGGGTGCTTTGGAATCCTCAGATTGAAGAGGCTATCTCTTTTAAGAATGGCATTGCATTTCATGGGTTTGATTTTCATGCCCCCATAAAAACGATTGGTGAAAACGACCATCCATATTCACTTAGGGAAGAGTTCATCAGTCATTTTCCCAGGAAAACTATTGAGGATCTACAACTTATGGATGAGGATGGGTGTTTTATTTGCCTTGCAAATGTTGATGGAATTGTGAAAAATGATTATTGGTGGTATCAGGCCTGTAAATGCCATAAGGCAGTCACTTATGATGATGATACTAATAAATATTATTGTACTGGGTGTGAGGCCAACGTTTCAGATGTTACTCCTAGGTTTAGGATAAGGTTGGATGTTAGTGATATTACTGAGAAGGATGAATTTGTCATCTTTGATTATGATGCTGCTTTTCTGCTATCCAAGACATGTGCATCAATGGTTGGGGATGCACTGTTCCCGTATCTTCATTATCCAGATGAGTTGAACATACTTATTGGCAAGGAACTGCTCTTTAAGGTAGAGGTTAAGGATGATCGTGCCTTTAAATTTGATGATTCCTTTAAGGTCAAGAAGATTTGTTCTAATAAAGATATTATAAGGGAATTCAAGGAAGAATCTTCAATCAAGACCCCAGAGAAGTCCACGTTCAAGGCACCTATGAGTGTGCTGCCTGGTGAGGAGTTACCTGTTGAGGGAGGTCCAGGTGCCAATATTGTAATTGATTTGGGTGATATGTGCGATGGTGGTGAAATCACTCCAATTTCTGCTGGAGAGTCCTCCAATGTTGCAGCGTGTATGGCTCCTCAGAAGCGTAAGGCTGCTTCCCGTGTTGAATGA 1446 0.4011 MWVICAKENPSNVFSVEMVLVDAKGGRIQASIRKAMLKKFMGNMVEGVVYKMTFFGVIDNLGSYRATTHEYKLLFQPRTKVYPAESEMISRFGLDVKSSEEIHQTSGDSEYLFDFMGVLTAVGEEKQYEKFNRTIRVLELELTDDKGVVRCSLFGHFIDLMRDYLKNRSIDELDIVVIQFARLKSYMGKNSLHTLSNSIRVLWNPQIEEAISFKNGIAFHGFDFHAPIKTIGENDHPYSLREEFISHFPRKTIEDLQLMDEDGCFICLANVDGIVKNDYWWYQACKCHKAVTYDDDTNKYYCTGCEANVSDVTPRFRIRLDVSDITEKDEFVIFDYDAAFLLSKTCASMVGDALFPYLHYPDELNILIGKELLFKVEVKDDRAFKFDDSFKVKKICSNKDIIREFKEESSIKTPEKSTFKAPMSVLPGEELPVEGGPGANIVIDLGDMCDGGEITPISAGESSNVAACMAPQKRKAASRVE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi564g00007 481 CDD RPA1_DBD_B_like 114 214 - -
Sebi564g00007 481 Coils Coil 121 141 - -
Sebi564g00007 481 SUPERFAMILY Nucleic acid-binding proteins 101 221 IPR012340 -
Sebi564g00007 481 Gene3D - 2 83 IPR012340 -
Sebi564g00007 481 CDD RPA1_DBD_C 251 381 IPR047192 -
Sebi564g00007 481 SUPERFAMILY Nucleic acid-binding proteins 12 86 IPR012340 -
Sebi564g00007 481 Pfam Domain of unknown function DUF223 17 85 IPR003871 -
Sebi564g00007 481 SUPERFAMILY Nucleic acid-binding proteins 248 395 IPR012340 -
Sebi564g00007 481 Gene3D - 243 406 IPR012340 -
Sebi564g00007 481 PANTHER OS03G0429900 PROTEIN 166 398 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi564g00007 481 Pfam Replication factor-A C terminal domain 274 381 IPR013955 -
Sebi564g00007 481 Gene3D - 89 222 IPR012340 -
Sebi564g00007 481 CDD RPA1_DBD_A_like 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi564g00007 Sebi-Chr564 293679 296026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi564g00007 13 346 Core DNA Replication Machinery Family AT5G08020 23.932 6.44e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi564g00007 - - lja:Lj6g3v0884310.1 367.851