Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi563g00012 ATGCCTAACCGTAGCCTCGACCGCATACTCTTCCGGAGGAATGGGAAATTGAAGGCTGAGCCTCTTGATTGGGGGCAAAGGGTGAAAATTGTGAAAGGTCTGGCAGCTGCATTGTATTATCTGTATGAACAGTTAGAAACTCAAATCATTCATAGGGATGTTAAGACAAGCAATGTAATGCTTGATTCCCATTTCAATGCTCGCTTGGTTGACTTTGGCATGGCAAGATTGGGAGAGACATCAAGGATTGGTGGTACAATTGGGTATCTTCCCCCTGAAAGCTTGCAGAAACCAAGCAATGCTACATCCAAATATGATGTATTCAGCTTTGGCATAGTTGTGCTAGAGGTGGTATTTGGAAGGAGAGCAATAGATTTCACATACCCAGATGATCAAATCATTTTGCTTGATTGGATCAAAAGGCTTTCTGATGAAAGGAAGGTTCTAGAGGCAGCTGATACTAGGCTACAAGATGGATCCTACAAGCTTTCTGAGATGCAACATCTCATTCACATAGGTCTTGTCTGCACACTCCATAAACCACAATTGAGGCCAATCATGAAATTACCAAATCAACACATAATGTCCACCACTTAA 597 0.4221 MPNRSLDRILFRRNGKLKAEPLDWGQRVKIVKGLAAALYYLYEQLETQIIHRDVKTSNVMLDSHFNARLVDFGMARLGETSRIGGTIGYLPPESLQKPSNATSKYDVFSFGIVVLEVVFGRRAIDFTYPDDQIILLDWIKRLSDERKVLEAADTRLQDGSYKLSEMQHLIHIGLVCTLHKPQLRPIMKLPNQHIMSTT 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi563g00012 198 PANTHER - 1 188 - -
Sebi563g00012 198 Pfam Protein kinase domain 15 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi563g00012 198 Gene3D Transferase(Phosphotransferase) domain 1 1 196 - -
Sebi563g00012 198 ProSiteProfiles Protein kinase domain profile. 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi563g00012 198 SUPERFAMILY Protein kinase-like (PK-like) 1 188 IPR011009 -
Sebi563g00012 198 SMART serkin_6 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi563g00012 198 FunFam Lectin-domain containing receptor kinase A4.3 1 197 - -
Sebi563g00012 198 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi563g00012 Sebi-Chr563 261558 262221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi563g00012 1 194 Receptor kinase-like Gene Family AT5G55830 46.117 2.77e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Sebi563g00012 Pkinase 1.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi563g00012 - - gmx:100796108 303.908