Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi562g00026 ATGGAAAACGTGCCACTTGAGGAGGTGTTTCAGACTTTAAGGTGTGATTCAAATGGACTCACAACAGAGGCTGCTCAGGAGCGATTGGCCATCTTTGGCTACAACAAACTGGAGGAGAAGAAGGTCTATCCCTTCAATGTTTGTTTTTTCTTGTTTTTCCCTTTTCAGTGGAGAAAGATGGCTCGAGGAGGCAAGTTTTTGAAGTTTTTGGGGTTTATGTGGAATCCTCTTTCATGGGTCATGGAAGCTGCAGCAATCATGGCCATTGCTTTGGCCAATGGAGGAGGCAAACCTCCTGATTGGCAAGACTTTGTTGGGATTATCACACTCCTCCTTATCAATTCAACAATAAGTTTCATAGAGGAGAACAATGCCGGTAATGCTGCTGCAGCTCTCATGGCTCGTCTTGCACCCAAAGCTAAGGTCCTTCGAGATGGGAAATGGATTGAGGAAGATGCTAGTATTCTTGTTCCTGGTGATATAATTAGTGTTAAGCTAGGGGATATTATCCCTGCAGATGCTCGTCTACTTGAAGGTGATCCATTGAAGATTGATCAGTCTGCACTCACAGGTGAGTCTCTTCCAGTCACCAAAGGCCCTGGTGATAGTGTTTTTTCAGGTTCTACATGCAAGCAGGGAGAGATTGAAGCAGTTGTTATTGCCACGGGAGTTCATACCTTCTTTGGCAAGGCTGCTCATCTTGTGGACTCCACAATCAAGTTGGGCATTTTCAGAAGATCATTGTCATGTACCCCAATTCAACACCGGAAATATCGTCCTGGGATTGACAATCTACTTGTGCTTCTCATTGGAGGAATTCCTATAGCTATGCCTACTGTCTTGTCAGTGACAATGGCAATTGGCTTCCCACCGCTTAGCTCAGCAGCAATAGAAGAGATGGCCGGTATGGACGTATTGTGCAGTGACAAAACTGGAACTTTGACTTTGAATAAATTAACAGTTGACAAGAATCTTATTGAGGTTTTTGCTAAAGGAGTTGATGCAGATACTGTTGTTCTCATGGCTGCTCGAGCTTCCAGAGTGGAAAACCAAGATGCTATAGATGCTGCTATTGTAGGGATGCTGGGTGATCCAAAAGAGGCAAGGGCTGGTATTCAAGAGACAGTGAAGGTAAATGCATCGTGTCAGCAAAGGTGCACCAGAGCAGGTGATCAACTGGCAATAGGAAAAGAAACAGGACGCCGTTTGGGGATGGGAACCAACATGTATCCTTCATCAGCTTTATTGGGCCAAAACAAGGATGACACAATTGCTGCCTTGCCAGTTGATGACTTGATTGAAAAAGCTGATGGATTTGCTGGTGTTTTTCCTGAGCACAAATATGAGATCGTAAAACGTTTACAAGCTAGGAAACACATATGTGGAATGACTGGTGATGGGGTTAATGATGCCCCTGCTCTTAAAAAAGCTGATATTGGAATAGCTGTTGCTGATGCAACTGATGCCGCTCGTAGTGCTTCTGACATTATATATGCAGTTTCCATCACAATCCGTATTGTGCTTGGTTTCATGCTACTAGCCCTCATATGGCAATTTGATTTTCCACCATTCATGGTGCTGATTATTGCTATTCTTAATGATGGTACAATTATGACAATATCAAAGGACAGGGTAAAACCATCACCATATCCAGATAGCTGGAAGCTGGCAGAGATCTTTACTACTGGAATAATTCTCGGTGGTTATTTGGCCATGATGACAGTTATTTTCTTTTGGGGAGCATATAAAACAGATTTTTTCCCTAGCACATTTGGGGTCTCAAGTCTTCATAAAAGAGATGTGGATGACTTCAGAAAGCTTGCCTCAGCAATATACCTACAAGTCAGTACAATTAGTCAGGCTCTCATATTTGTAACACGGGCACGGAGTTGGTCTTATGTTGAGCGTCCGGGTTTGTTACTTGTAGCAGCTTTTATTGTTGCCCAGCTTATAGCTACACTGATTGCAGTTTATGCAAGTTGGAGTTTTGCTGCAATTGAAGGGATAGGATGGGGTTGGGCTGGTGTTGTTTGGCTTTACAACCTCATCTTTTATATCCCACTTGATTTTATCAAATTCATAATTCGATATGCCTTGAGTGGTAAGGCTTGGGATCTTGTTATTGAGCAAAGGATTGCTTTCACAAGGAAAAAGGATTTTGGAAAGGAAGAACGTGAACTTAAATGGGCACATGCACAGAGGACACTTCATGGCCTTCACCCACCAGAGACCAAGATGTTCAGTGAACGTACAAATTACACAGAACTTAATCAGATGGCTGAAGAGGCTAAAAGACGAGCAGAGATTGCAAGACTGAGAGAACTGCATACACTGAAGGGTCATGTTGAATCAGTGGTTAGACTGAAGGGCCTTGACATTGACACAATACAGCAAGCATACACTGTCTAG 2409 0.4313 MENVPLEEVFQTLRCDSNGLTTEAAQERLAIFGYNKLEEKKVYPFNVCFFLFFPFQWRKMARGGKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWIEEDASILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTIKLGIFRRSLSCTPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGFPPLSSAAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDADTVVLMAARASRVENQDAIDAAIVGMLGDPKEARAGIQETVKVNASCQQRCTRAGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDDTIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIIYAVSITIRIVLGFMLLALIWQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPYPDSWKLAEIFTTGIILGGYLAMMTVIFFWGAYKTDFFPSTFGVSSLHKRDVDDFRKLASAIYLQVSTISQALIFVTRARSWSYVERPGLLLVAAFIVAQLIATLIAVYASWSFAAIEGIGWGWAGVVWLYNLIFYIPLDFIKFIIRYALSGKAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLHPPETKMFSERTNYTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi562g00026 802 Gene3D - 319 385 IPR023299 GO:0000166
Sebi562g00026 802 Gene3D - 390 495 IPR023214 -
Sebi562g00026 802 Gene3D - 304 318 IPR023214 -
Sebi562g00026 802 PRINTS H+-transporting ATPase (proton pump) signature 464 480 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi562g00026 802 PRINTS H+-transporting ATPase (proton pump) signature 612 633 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi562g00026 802 PRINTS H+-transporting ATPase (proton pump) signature 436 452 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi562g00026 802 PANTHER CALCIUM-TRANSPORTING ATPASE 4 376 - -
Sebi562g00026 802 NCBIfam HAD-IC family P-type ATPase 439 497 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi562g00026 802 NCBIfam HAD-IC family P-type ATPase 107 328 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi562g00026 802 ProSitePatterns E1-E2 ATPases phosphorylation site. 309 315 IPR018303 -
Sebi562g00026 802 FunFam Plasma membrane ATPase 138 222 - -
Sebi562g00026 802 Coils Coil 753 773 - -
Sebi562g00026 802 PRINTS P-type cation-transporting ATPase superfamily signature 307 321 - -
Sebi562g00026 802 PRINTS P-type cation-transporting ATPase superfamily signature 464 483 - -
Sebi562g00026 802 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Sebi562g00026 802 PRINTS P-type cation-transporting ATPase superfamily signature 487 499 - -
Sebi562g00026 802 SUPERFAMILY HAD-like 303 498 IPR036412 -
Sebi562g00026 802 Pfam E1-E2 ATPase 136 238 - -
Sebi562g00026 802 Gene3D - 100 303 - -
Sebi562g00026 802 FunFam Plasma membrane ATPase 356 511 - -
Sebi562g00026 802 Gene3D - 496 698 - -
Sebi562g00026 802 Gene3D - 751 802 - -
Sebi562g00026 802 Pfam haloacid dehalogenase-like hydrolase 378 478 - -
Sebi562g00026 802 Gene3D - 138 222 - -
Sebi562g00026 802 Pfam Cation transporter/ATPase, N-terminus 3 50 IPR004014 -
Sebi562g00026 802 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 699 IPR023298 -
Sebi562g00026 802 SUPERFAMILY Calcium ATPase, transduction domain A 138 235 IPR008250 -
Sebi562g00026 802 SMART Cation_ATPase_N_a_2 2 93 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi562g00026 Sebi-Chr562 482181 489349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi562g00026 390 802 Primary Pumps ATPases AT5G62670 82.766 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi562g00026 K01535 - gmx:100818268 743.806