Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi562g00022 ATGGGGTTTGGAAATAATGCAGTTCAGGCAGGGAGTTTGGATGTTGACAAGTCAAAGGGAAGGAAGAAGGTGGATGGTGCAAAGAAGGAGAGAAGATGGTGTTTTAGATTCAGTTTCTTTGGAAGCTGCATACCTTCAAGATCAAAAGTTGATAGCTCCATAAGTGGCGCTAGTACCCATAATGGTGACAATAACAAGTCAGTGAAAATTCAATCAGAGGAAAACAAATCTGGATTTGAAAAAAATACAAAGGAAACAAATGCTCCTCCAGAGTCCTCTACAACAACTAGTAATGCGGAAAGTATCCCTTCCACTCCAAAATTCAGTGAGGAGTTGAAGGTTGCTTCTTGTTTGAGAAAATTCACATTCAATGGGCTTAAGGTGGCAACTAGGAATTTCAAACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGTTGTGTCTTCAAAGGTTGGATTGAGGAGAATGGAACTGCACCTGTGAAACCAGGTACTGGGCTTACAGTTGCAGTCAAGATCCTCAACCACAATGGACATCAGGGTCACAAAGAGTGGCTTGCTGAACTGAACTATCTTGGTGATCTTCTCCATCCTAATCTCGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTACGAGTTTATGCCCCGAGGCAGTTTGGAGAACCACCTCTTTAGAAACTCAAGGTAG 702 0.4188 MGFGNNAVQAGSLDVDKSKGRKKVDGAKKERRWCFRFSFFGSCIPSRSKVDSSISGASTHNGDNNKSVKIQSEENKSGFEKNTKETNAPPESSTTTSNAESIPSTPKFSEELKVASCLRKFTFNGLKVATRNFKPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKILNHNGHQGHKEWLAELNYLGDLLHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRNSR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi562g00022 233 SUPERFAMILY Protein kinase-like (PK-like) 105 232 IPR011009 -
Sebi562g00022 233 MobiDBLite consensus disorder prediction 67 81 - -
Sebi562g00022 233 MobiDBLite consensus disorder prediction 1 28 - -
Sebi562g00022 233 ProSitePatterns Protein kinases ATP-binding region signature. 139 171 IPR017441 GO:0005524
Sebi562g00022 233 ProSiteProfiles Protein kinase domain profile. 133 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi562g00022 233 FunFam Serine/threonine-protein kinase BIK1 100 218 - -
Sebi562g00022 233 MobiDBLite consensus disorder prediction 47 105 - -
Sebi562g00022 233 Pfam Protein tyrosine and serine/threonine kinase 137 231 IPR001245 GO:0004672|GO:0006468
Sebi562g00022 233 MobiDBLite consensus disorder prediction 82 105 - -
Sebi562g00022 233 MobiDBLite consensus disorder prediction 47 66 - -
Sebi562g00022 233 PANTHER OS01G0588500 PROTEIN-RELATED 86 230 - -
Sebi562g00022 233 Gene3D Phosphorylase Kinase; domain 1 117 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi562g00022 Sebi-Chr562 439884 441999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi562g00022 119 229 Glycoside Hydrolase AT3G07070 52.252 9.06e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi562g00022 PK_Tyr_Ser-Thr 9.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi562g00022 - - gmx:100499647 381.719