Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sebi562g00017 | ATGGGCATGGTAGGAAGTGCGACTAAGGTTACCTTTATCTTGTTGGTAACTTTTGCCATTACCATTCCATGCCTTGAGGCTGGCATTGCTGCGTTCGATGATTTTCTCAAATCTCAAGCTGAGGAAGCTCATAAACTTGCTCTTGCTTCCTACGTGCCAAGCCCTGAAGATATTACGGATGAACTCAATCTACACGTTCATTTGGCATTAAATAGCACAAGGAGAGAACTAAGGTCAAAACGTAAAAGAGGACCATGTGAGGCCTCCAACCCCATTGACAAATGTTGGAGGTGCAAGAAAAACTGGGCCAAACATAGGTTTAGATTGGCCAAATGTGGCAAAGGTTTTGGAAGAAGGGCCACAGGAGGGCTTGGAGGTCCAATCTATGTGGTGACTGATTCATCTGATGATCACATGGTGAACCCTAAACCTGGGACTCTTCGTTTTGGTGTTGTCCAAAAGGGTCCATTGTGGATCATCTTTAAACGCAGCATGGTCATCACATTGAAGAATGAGTTGTTGGTTTCCTCAGACAAGACCATTGATGGTCGTGGAGCCAATGTTATGATTAGGGATGGTGCTGGCATCACCATGCAATTTGTCAATAATGTCATCATCCATGGCCTTCGCATAAAGAACATCAAAGCTAAGCCAGGTGGCCTTATAAGGGACTCTTGGAACCATGTTGGACTAAGAACAAGGAGTGATGGTGATGCCATCTCCATTTTTGGATCCTCAAACATTTGGATTGATCATCTTTCCCTCTCTCAATGTGAGGATGGTCTTGTTGACATTATCCAAGGTTCCACTGCCATCACCGTCTCAAATTGCCACATGACCAAACATAACGATGTGATGTTGTTTGGAGCTAGTGATTCCTACAATGGGGATAAGATTATGCAAGTGACGGTGGCATTCAACCATTTTGGTCAAGGATTGATTCAGAGGATGCCTAGGTGTAGATGGGGTTTTGTGCATGTTTTGAACAATGATTACACTCACTGGATGATGTATGCAATTGGTGGTAGCTCAGGGCCAACAATTCTAAGTCAAGGAAATCGGTTCATTGCACCTAACAATGATGCTGCAAAAGAGATCACACATAGAGACTATGCAACGCCAGAAGTGTGGAAGAATTGGCAATGGACATCAGAGATGGACCTATTCATGAATGGTGCCAAGTTTACTGCATCTGGTGCACCTATTAATAAGCATTCATACAAAAAAGGGTTCATGATGAAACCAAGAGATGGAACCCATGTTAGTAGGTTAACAAGGTATACTGGTGCCCTTCCTTGCAAGCAGTTTCATACTTTCATCTTCACTGGCGGCTTAGAAATAGAAGTTGACGATTTGGCTAGCTTCGATCTCAACAAAGCACTTTTGTTGACGTCGGAGTGGTACTCTGTGGTCTCGTTCATCTTCGAGTTGGTGGCTTCATACCCGGCCGAGAAATTTCCGGTTGCTGGAAAGCCCTTCCATGTGGAGTGA | 1491 | 0.4413 | MGMVGSATKVTFILLVTFAITIPCLEAGIAAFDDFLKSQAEEAHKLALASYVPSPEDITDELNLHVHLALNSTRRELRSKRKRGPCEASNPIDKCWRCKKNWAKHRFRLAKCGKGFGRRATGGLGGPIYVVTDSSDDHMVNPKPGTLRFGVVQKGPLWIIFKRSMVITLKNELLVSSDKTIDGRGANVMIRDGAGITMQFVNNVIIHGLRIKNIKAKPGGLIRDSWNHVGLRTRSDGDAISIFGSSNIWIDHLSLSQCEDGLVDIIQGSTAITVSNCHMTKHNDVMLFGASDSYNGDKIMQVTVAFNHFGQGLIQRMPRCRWGFVHVLNNDYTHWMMYAIGGSSGPTILSQGNRFIAPNNDAAKEITHRDYATPEVWKNWQWTSEMDLFMNGAKFTASGAPINKHSYKKGFMMKPRDGTHVSRLTRYTGALPCKQFHTFIFTGGLEIEVDDLASFDLNKALLLTSEWYSVVSFIFELVASYPAEKFPVAGKPFHVE | 496 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sebi562g00017 | 496 | Pfam | Pectate lyase, N terminus | 29 | 77 | IPR007524 | GO:0030570 | |
Sebi562g00017 | 496 | Gene3D | - | 89 | 432 | IPR012334 | - | |
Sebi562g00017 | 496 | PRINTS | Pollen allergen Amb family signature | 136 | 161 | IPR018082 | - | |
Sebi562g00017 | 496 | PRINTS | Pollen allergen Amb family signature | 380 | 404 | IPR018082 | - | |
Sebi562g00017 | 496 | PRINTS | Pollen allergen Amb family signature | 338 | 357 | IPR018082 | - | |
Sebi562g00017 | 496 | PRINTS | Pollen allergen Amb family signature | 410 | 433 | IPR018082 | - | |
Sebi562g00017 | 496 | PRINTS | Pollen allergen Amb family signature | 172 | 188 | IPR018082 | - | |
Sebi562g00017 | 496 | PRINTS | Pollen allergen Amb family signature | 112 | 129 | IPR018082 | - | |
Sebi562g00017 | 496 | PRINTS | Pollen allergen Amb family signature | 236 | 257 | IPR018082 | - | |
Sebi562g00017 | 496 | PRINTS | Pollen allergen Amb family signature | 316 | 335 | IPR018082 | - | |
Sebi562g00017 | 496 | Pfam | Pectate lyase | 171 | 355 | IPR002022 | - | |
Sebi562g00017 | 496 | PANTHER | PECTATE LYASE 18-RELATED | 43 | 435 | IPR045032 | GO:0030570 | |
Sebi562g00017 | 496 | SMART | amb_all | 164 | 361 | IPR002022 | - | |
Sebi562g00017 | 496 | SUPERFAMILY | Pectin lyase-like | 90 | 430 | IPR011050 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sebi562g00017 | Sebi-Chr562 | 380770 | 384425 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sebi562g00017 | 14 | 434 | Polysaccharide Lyase | AT5G15110 | 54.031 | 1.44e-178 | 508 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sebi562g00017 | K01728 | - | gmx:100785801 | 723.391 |