Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi562g00013 ATGGAAATGGTGATAAAGAATGAAGACAAGAGAAGCTGGGTGTCCATGGCAGAAGGTGAGTTTCAGGTGGCTCGGTTTGCCAAGAGACGTCGAAGAGAGCCTGCAGAAGCTGCACTAACTTGTGAGGGTAACCAAGGTCAGAAGCAACAGTTGCTGCCACAGAAACAAGTTGATCAAAATTCCACTACCAGCACTACAAAAAGAAGTTCAAGATTTCGGGGTGTCAGCAGACATAGATGGACGGGTCGATTTGAAGCTCACTTATGGGACAAGCTCTCTTGGAACATCACCCAAAAGAAGAAAGGGAAGCAAGAAATGTGTTTTCATGTTCAAACTTTGCCTTTGGAACTGGATTGGAATTGGTTGTTGGGACCAACAGTTTACCTTGGGGCTTACGATGAAGAAGAATCAGCAGCCAGAGCATATGATTTAGCTGCACTTAAGTACTGGGGAACATCAACTTTCACCAATTTTCCTATCTCGGAATACGAAAAACAGATAGAGATCATGCAAACTATGACAAAAGAGGAGTACTTGGCCACTTTAAGGAGAAAGAGTAGTGGCTTTTCAAGAGGTGCATCAAAGTATAGGGGTGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGGATCGGGAGGGTTTTTGGAAACAAATATCTCTACCTTGGTACCTACAGCACCCAAGAGGAAGCTGCTCGTGCTTATGACATAGCAGCCATTGAGTACAGAGGGATCCATGCTGTAACCAACTTTGACCTGAGTACTTACATAAGATGGTTAAATCCTTCAGCAGGAAATATCTCAGAAACAAAACTTGAATCAAAGGTAGCACCAGAGTCTCAGACAGTGGCTTCCCAATCTAACTACTCTCAAATAGAGGGGTCCAAATCCTTGGCCCTTTACAGCAGTACTTACAATTCAGATTATCTGAATTCCCCTCAAAAGCATGAAGTCGTTGAAAACAAAACATACCAAGTCTCCAGCACTAAGTCATCTTCTCCGACTGCACTTGGGCTCCTTCTCCGCTCTTCAGTATTTAGAGAATTAGTTGAAAAGAATTTGAACATATCTGGAGATGGAACTGATTGGGAAGACACAAAGGACCAACAGCCACAGACAGCTAGTGATGATGAGTTGGTTGGGATCTTTTATGATGGAACTGGTGATACTGATATCCCATTTCCGTGA 1191 0.4349 MEMVIKNEDKRSWVSMAEGEFQVARFAKRRRREPAEAALTCEGNQGQKQQLLPQKQVDQNSTTSTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNITQKKKGKQEMCFHVQTLPLELDWNWLLGPTVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISEYEKQIEIMQTMTKEEYLATLRRKSSGFSRGASKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIRWLNPSAGNISETKLESKVAPESQTVASQSNYSQIEGSKSLALYSSTYNSDYLNSPQKHEVVENKTYQVSSTKSSSPTALGLLLRSSVFRELVEKNLNISGDGTDWEDTKDQQPQTASDDELVGIFYDGTGDTDIPFP 396
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sebi562g00013 396 SUPERFAMILY DNA-binding domain 194 255 IPR016177 GO:0003677
Sebi562g00013 396 SUPERFAMILY DNA-binding domain 124 161 IPR016177 GO:0003677
Sebi562g00013 396 CDD AP2 72 161 IPR001471 GO:0003700|GO:0006355
Sebi562g00013 396 ProSiteProfiles AP2/ERF domain profile. 71 159 IPR001471 GO:0003700|GO:0006355
Sebi562g00013 396 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 47 317 - -
Sebi562g00013 396 Gene3D AP2/ERF domain 70 161 IPR036955 GO:0003700|GO:0006355
Sebi562g00013 396 Gene3D AP2/ERF domain 194 255 IPR036955 GO:0003700|GO:0006355
Sebi562g00013 396 ProSiteProfiles AP2/ERF domain profile. 195 253 IPR001471 GO:0003700|GO:0006355
Sebi562g00013 396 CDD AP2 194 255 IPR001471 GO:0003700|GO:0006355
Sebi562g00013 396 MobiDBLite consensus disorder prediction 34 74 - -
Sebi562g00013 396 MobiDBLite consensus disorder prediction 42 70 - -
Sebi562g00013 396 SMART rav1_2 195 259 IPR001471 GO:0003700|GO:0006355
Sebi562g00013 396 SMART rav1_2 71 165 IPR001471 GO:0003700|GO:0006355
Sebi562g00013 396 MobiDBLite consensus disorder prediction 358 379 - -
Sebi562g00013 396 FunFam AP2-like ethylene-responsive transcription factor 194 255 - -
Sebi562g00013 396 Pfam AP2 domain 194 245 IPR001471 GO:0003700|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sebi562g00013 Sebi-Chr562 312448 314349 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi562g00013 53 307 AP2-EREBP Transcription Factor Family AT5G57390 52.344 4.48e-80 251
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi562g00013 AP2 8.2e-12 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi562g00013 - - ahf:112716370 537.724