Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi562g00003 ATGGCAAGCCCAGTAGGTGCTGGACCTAAGACCGGAGCTGGTAAGAATGTGGGAAAATCCAAAGGAGGAAAAGACAAAGGTGTCAAAGGTGAAGGTTCAAGCTTTTGGATGAAGCTTTGGATGTTGTTCGCTTGCATGGCTTGGGGGTCCAAAGCGGAACATCGCTCCTCAGGTGACACTGACAGCAACAACAAACAGGATAAGGGTATTCTGCTTCTACCTTGTTTCACCAATATTCTTGTCACAGTTTTAGGAAAGAAACCTATAAGAGATAATGGCAAAGCTCCAGTGGTTGCTGAAGCATCCTCAAGCAACAATAACAATCAAGGAACAAGTGGATCTACTCCCCACCTGATCATGGAACTGCAATATTATTCCCATCTTAGGCAATTCACCTTTCATGAGCTCAATTTGGCAACTAAGAATTTCAAAGCTGGGAATTTTCTTGGTGAGGGAGGCTTTGGTACTGTACATAAAGGATGGATCATTCAGAACGGTTGCTCCCCATCAAGACCTGGAGTAGGGATTCCAGTTGCAGTGAAGACCCTCAACATAGAAGGAAATCAGGGTCATAAAGAGTGGGTGGCTGAAGTGAGCAATCTAGGTGCTCTAGAACACCCCAACCTTGTTAAATTGGTTGGATACTGCATAGAAAGAGATAACAGGGTTTTGGTGTATGAATTTATGCCTAGAGGAAGTTTAGAACACCATCTCTTTAGGAGTACGTAA 729 0.439 MASPVGAGPKTGAGKNVGKSKGGKDKGVKGEGSSFWMKLWMLFACMAWGSKAEHRSSGDTDSNNKQDKGILLLPCFTNILVTVLGKKPIRDNGKAPVVAEASSSNNNNQGTSGSTPHLIMELQYYSHLRQFTFHELNLATKNFKAGNFLGEGGFGTVHKGWIIQNGCSPSRPGVGIPVAVKTLNIEGNQGHKEWVAEVSNLGALEHPNLVKLVGYCIERDNRVLVYEFMPRGSLEHHLFRST 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi562g00003 242 ProSitePatterns Protein kinases ATP-binding region signature. 149 181 IPR017441 GO:0005524
Sebi562g00003 242 Pfam Protein tyrosine and serine/threonine kinase 145 240 IPR001245 GO:0004672|GO:0006468
Sebi562g00003 242 MobiDBLite consensus disorder prediction 1 29 - -
Sebi562g00003 242 ProSiteProfiles Protein kinase domain profile. 143 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi562g00003 242 SUPERFAMILY Protein kinase-like (PK-like) 112 241 IPR011009 -
Sebi562g00003 242 FunFam Serine/threonine-protein kinase BIK1 109 228 - -
Sebi562g00003 242 PANTHER OS01G0588500 PROTEIN-RELATED 99 240 - -
Sebi562g00003 242 Gene3D Phosphorylase Kinase; domain 1 123 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi562g00003 Sebi-Chr562 86190 87582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi562g00003 129 242 Glycoside Hydrolase AT3G07070 48.246 1.16e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi562g00003 PK_Tyr_Ser-Thr 6.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi562g00003 - - tcc:18601446 194.512