Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi561g00033 ATGGCTAGGAGGAGGCTGAAACTTGCTTATATCTCTAATGACGTGGCAAGGAAAGCAACATACAATAAAAGGAAGAAGGGTATCATAAAGAAGGTGAGTGAACTCACCACTCTTTGTGGGATTCCGGCATGTGCTATAATTTCTAGTCCCTTTGATTCCAAGACAGAGGTTTGGCCAAATCCAGAGGGAGCCAAGAAGGTGATTGAGATGTATAAGAATGCATCTGTGATTGATGAAAGGAAAAATGTGAACCAAGAGAGCTTCCTCATGCAGATGATTGACAAAGCCCAAGACCACCAGAAGAAGGTGCGCCACGACAACCGTGAAAAGGAATTGACCATGACTATGCTCGATTGTATGCGAGGTGAAACCCTGCCAAACATGCCCCTCGAAGATGCAAATGATCTCAACAAGCTGATTGACAAGAAATTGAAAGAAATTGAAATTAATATTGCTAAGCTTAATTGA 468 0.4209 MARRRLKLAYISNDVARKATYNKRKKGIIKKVSELTTLCGIPACAIISSPFDSKTEVWPNPEGAKKVIEMYKNASVIDERKNVNQESFLMQMIDKAQDHQKKVRHDNREKELTMTMLDCMRGETLPNMPLEDANDLNKLIDKKLKEIEINIAKLN 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi561g00033 155 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Sebi561g00033 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi561g00033 155 Gene3D - 14 117 IPR036879 GO:0003677|GO:0046983
Sebi561g00033 155 PANTHER MADS BOX PROTEIN 3 151 - -
Sebi561g00033 155 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Sebi561g00033 155 Coils Coil 130 150 - -
Sebi561g00033 155 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Sebi561g00033 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Sebi561g00033 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi561g00033 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi561g00033 155 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi561g00033 Sebi-Chr561 584242 584709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi561g00033 3 151 Type I MADS-box Gene Family AT1G65300 42.581 1.07e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi561g00033 SRF-TF 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi561g00033 - - gmx:100792290 186.422