Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi561g00010 ATGAGGAACTTGAAGTATGTATTGTTTGGATCAAATGGACTTTTGGGTCCAATTCCCTCAACAATTGGGATGTTGACAAATCTTGTTGAGCTTGATTTGTCAGATAATGTCCTCAATGGTACAATTCCTTCACTGAGAAACTTGAGAAATTTAGAACAACTTTACCTCCATAACAACAGTCTCTCTGGGCCTATTCCTGAGGAAATTGGGAAACTCTATTCTCTCACAACAATCCAATTGTTATTCAATAACTTGTCTGGGCCAATACCACCCTCCATAGGAAACTTGGTCAATTTGAATTCTCTTAAACTTGGAAATAACAAACTTTATGGATCAATTCCATCTTCTCTTGGAAACTTGACAAAGCTCTCCAAGTTGTCCATGAACCATAACAGTCTTTCTGGATCAATTCCTACTACCATGGGAAACTTGGTCAACTTAGAGGGGCTTAACCTTGCAGAAAACAAACTCTCTGGACCTATTCCTTCTTCCTTTGGAAATATGACAAAGCTCAACTTTCTATTACTCTATGACAACAATTTTACTGGCAATATTCCTATAGAAATAGGATCTTTGCTAGAACTTCGACGTATGGAGCTGGCAGAAAATAATTTAAGTGGTCCAATCCCAAAACAGGTTGGAGAGTTACTCAATTTATTTCAATTGAATTTGAGCAAAAATAATTTCATAGGAAGCATTCCATCTGAAATTGGGCAACTGCAATCTCTTCAAAATCTCGATCTCAGTGGGAATTTGTTGAATGGAAAAATACCAGCAATGCTTGGAAAGTTGAGAAAATTGGAAATATTGAACCTCTCCCACAATAATCTCTCTGGCACAATTCCATCTGATTTTGAGGATACATATGAAGCTCGCATCTCAGACTTTGGAATAGCTAAGATTTTGAGTCATGATTCACGTTGTTCAACCACTTTCGCAGGCACCTATGGATATGTTGCACCAGAACTTGCTTATAATATTGAAGCAAATGAGAAATGTGATGTCTTTAGTTTTGGGGTGCTTTCTTTGGAAATAATGATGGGAAAGCATCCAGAAGAAATCATTTCTTCATTGTTTTCATCCCCTGAAATGGCAATAACATCAAAGTTGCTATTGATGGATGTGTTGGACCAACGACTTCCCCATCCAATGAAGTTCTCAATTGTTAAAGAGGTGATCTTGATTGCTAGAATAACATTTGCATGCTTGAGTAAAAGTCCAGAGTCTCGCCCCACCATGGAACAAGTGTATAAGGAGTTTGTGATGCCAACATCATCTTTAGAGAATCCACTCCCCACAATCACACTTGGACAACTCCTAAATAATTGA 1329 0.3777 MRNLKYVLFGSNGLLGPIPSTIGMLTNLVELDLSDNVLNGTIPSLRNLRNLEQLYLHNNSLSGPIPEEIGKLYSLTTIQLLFNNLSGPIPPSIGNLVNLNSLKLGNNKLYGSIPSSLGNLTKLSKLSMNHNSLSGSIPTTMGNLVNLEGLNLAENKLSGPIPSSFGNMTKLNFLLLYDNNFTGNIPIEIGSLLELRRMELAENNLSGPIPKQVGELLNLFQLNLSKNNFIGSIPSEIGQLQSLQNLDLSGNLLNGKIPAMLGKLRKLEILNLSHNNLSGTIPSDFEDTYEARISDFGIAKILSHDSRCSTTFAGTYGYVAPELAYNIEANEKCDVFSFGVLSLEIMMGKHPEEIISSLFSSPEMAITSKLLLMDVLDQRLPHPMKFSIVKEVILIARITFACLSKSPESRPTMEQVYKEFVMPTSSLENPLPTITLGQLLNN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi561g00010 442 Gene3D Ribonuclease Inhibitor 87 186 IPR032675 -
Sebi561g00010 442 ProSiteProfiles Protein kinase domain profile. 31 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi561g00010 442 Pfam Protein kinase domain 290 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi561g00010 442 ProSiteProfiles Leucine-rich repeat profile. 27 49 IPR001611 GO:0005515
Sebi561g00010 442 Pfam Leucine rich repeat 219 277 IPR001611 GO:0005515
Sebi561g00010 442 SUPERFAMILY L domain-like 2 285 - -
Sebi561g00010 442 Gene3D Transferase(Phosphotransferase) domain 1 290 430 - -
Sebi561g00010 442 Gene3D Ribonuclease Inhibitor 187 289 IPR032675 -
Sebi561g00010 442 Gene3D Ribonuclease Inhibitor 1 86 IPR032675 -
Sebi561g00010 442 SMART LRR_typ_2 144 167 IPR003591 -
Sebi561g00010 442 SMART LRR_typ_2 264 287 IPR003591 -
Sebi561g00010 442 SMART LRR_typ_2 48 72 IPR003591 -
Sebi561g00010 442 SMART LRR_typ_2 96 120 IPR003591 -
Sebi561g00010 442 SMART LRR_typ_2 25 47 IPR003591 -
Sebi561g00010 442 SMART LRR_typ_2 216 240 IPR003591 -
Sebi561g00010 442 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 287 - -
Sebi561g00010 442 PRINTS Leucine-rich repeat signature 264 277 - -
Sebi561g00010 442 PRINTS Leucine-rich repeat signature 28 41 - -
Sebi561g00010 442 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 86 - -
Sebi561g00010 442 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 87 297 - -
Sebi561g00010 442 SUPERFAMILY Protein kinase-like (PK-like) 287 428 IPR011009 -
Sebi561g00010 442 SMART serkin_6 168 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi561g00010 Sebi-Chr561 228649 231502 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi561g00010 291 416 Receptor kinase-like Gene Family AT5G46330 33.566 6.64e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi561g00010 Pkinase 9.5e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi561g00010 - K13468 cave:132169576 301.597