LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi561g00009	ATGTCCAAGATTCCTTCCTACTCTCCTCTGATACAGTTGCCCCTTACCTACATTGTATACTTGGGAGGACATTCTCATGGTCCAAATCCATCTCTTGATGATCTTGAGTCAGCCACCAATTCCCATTATGATTTTCTGGCTTCAGTCTTTGGAAGCCGTGAGAAAGCAGAGGAAGCAGTTTTGTACTCGTACAATAAGCACATCAATGGGTTTGCTGCACTACTTGAAGAGGAAGAGGCGTCAGAGATTGCAAGGGTTTGGCCCGAACACATAAGTTTCAGTGACTTCGGATACGGTCCAGTGCCATCAAAGTGGCGTGGGAATGGAGTCTGTGAGATTGACCATTTTACAAGTTTAAATACAGCACACTGTAACAGGAAGCTGATCGGAGCAAGAATCTTTAGCAAAGATTATGAGTCACGATATGGCAAACTGAATCCCTTAAATCTCACTGCACGTGACTTTGTTGGCCATGGTACTCATACTCTGTCCACAGCTGCTGGTAACTTCATTCCTGGTGCAACCATATTTGGTAATGGCAATGGCACTGCAAAGGGTGGTTCCCCAAGAGCTCGTGTGGCAACCTACAAAGTTTGTTGGTCTGCATATGATGCTGGTGGTTGCCATGAAGCTGACATTCTACAAGCATTTGATCAAGCAATATATGATGGTGTTGATGTCATCTCAACCTCTGTGGGTGCCTCTGATCCTTATATTGAAGCTTTTTTCACAGATGGGATTTCCATTGGGGCCTTCCATGCAGTTGCTAGAAATATTGTGGTGGTTTGCTCTGCTGGCAATGATGGGCCAGCACCTAGAACTGTAACAAATGTGGCACCTTGGTCCTTCACAGTTGCTGCTAGTACAATAGACAGGGATTTTTGGAGTGACATTTCTCTTGCAAACAAACATTACTTTAAGGGAGCTAGTCTTAGTAGAGGCTTACCATCAAGGAAATTTTATCCATTGGTTCATTCTATTGATGCTAGATTTCCTAATGCCACAATTGAAGATGCTCGTTTTTGCAAGCATGGAACACTTGATCCTACTAAAGTAAGGGGAAAATTATTAGTCTGCATTAGACAAGACAGAACAACATCAGTTGCTCAGGGCTATGAAGCTGCTCTTGCAGGGGCAGTAGGAATATTTGTGATCAATGATGAGAAAAGTGGTAATATACTTCTAGCTGAGCCTCATCCTTTACCTGGTGCAAGTTTGGATGTCTATGAGGATGATGATATTGATGAGCGTGAATGGTTTGGAAAAGGAGGTTCAGACAAAAACAATAGCAGGGAAATGGCTGCTTATATGAATGCAGCAACAACATATACAGGAATAAAGCCAGCTCCAATTATGGCTGGATTCTCATCCAGGGGTCCTAGTGCTGTGCAGCCATTGATACTCAAGCCTGATGTAACTGCTCCTGGTGTAAACATATTGGCTGCATATTCACTAGCCACAAGTCCATCTAATTTACCATCAGATAGAAGAAGAGTTCCTTTCAATATGCAACAGGGAACTTCTATGTCTTGCCCTCATGTTGCTGGCATTGTTGGTCTTCTCAAGACACTTCATCCTAGTTGGAGTCCAGCAGCTATCAAATCAGCCATTATGACTACTGCTACCACACTGGATAACACCAATCAACCGATTCGAGATGCGTTTGATCAGATAGCAACACCATTTGAATATGGCTCTGGACATATTAGGCCTAACCTTGCAATGGACCCTGGACTTGTTTATAATCTAAGCACAATTGATTACTTGAATTTCATATGTGCTTCTGGTCATGACCAAAATATACTCAAGTTCTTTAATCATAGCTCTTTCACTTGTCCAGAGTCTTACAACATTGAAAATTTCAACTATGCTTCAATCACTGTAACTAATCGTGGGATGAACCCTATAAATGTTACTCGTACAGTTACAAATGTTGGGCCTCCAAGCACATATATTGTGGAAACTCACTCCCCTAAAGAATTTAAGGTCCTTGTTCAACCTAGTTCATTGACTTTTATGACAATTAGAGAAAAGAAGACCTTCCAGGTTATTCTGCAGGCAATAAGTTGGCCACCTCATGGTTTTCCAATATTTGGGAACTTGACATGGACAAATGGCAAGCACAGAGTAACCAGTCCTATTGTAGTTTTGTAA	2154	0.4201	MSKIPSYSPLIQLPLTYIVYLGGHSHGPNPSLDDLESATNSHYDFLASVFGSREKAEEAVLYSYNKHINGFAALLEEEEASEIARVWPEHISFSDFGYGPVPSKWRGNGVCEIDHFTSLNTAHCNRKLIGARIFSKDYESRYGKLNPLNLTARDFVGHGTHTLSTAAGNFIPGATIFGNGNGTAKGGSPRARVATYKVCWSAYDAGGCHEADILQAFDQAIYDGVDVISTSVGASDPYIEAFFTDGISIGAFHAVARNIVVVCSAGNDGPAPRTVTNVAPWSFTVAASTIDRDFWSDISLANKHYFKGASLSRGLPSRKFYPLVHSIDARFPNATIEDARFCKHGTLDPTKVRGKLLVCIRQDRTTSVAQGYEAALAGAVGIFVINDEKSGNILLAEPHPLPGASLDVYEDDDIDEREWFGKGGSDKNNSREMAAYMNAATTYTGIKPAPIMAGFSSRGPSAVQPLILKPDVTAPGVNILAAYSLATSPSNLPSDRRRVPFNMQQGTSMSCPHVAGIVGLLKTLHPSWSPAAIKSAIMTTATTLDNTNQPIRDAFDQIATPFEYGSGHIRPNLAMDPGLVYNLSTIDYLNFICASGHDQNILKFFNHSSFTCPESYNIENFNYASITVTNRGMNPINVTRTVTNVGPPSTYIVETHSPKEFKVLVQPSSLTFMTIREKKTFQVILQAISWPPHGFPIFGNLTWTNGKHRVTSPIVVL	717

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi561g00009	717	Gene3D	-	291	444	-	-
	Sebi561g00009	717	ProSitePatterns	Serine proteases, subtilase family, serine active site.	506	516	IPR023828	-
	Sebi561g00009	717	ProSiteProfiles	Serine proteases, subtilase domain profile.	1	575	-	-
	Sebi561g00009	717	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	86	716	IPR045051	-
	Sebi561g00009	717	Pfam	Subtilase family	135	546	IPR000209	GO:0006508\|GO:0008236
	Sebi561g00009	717	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	13	89	IPR037045	-
	Sebi561g00009	717	PRINTS	Subtilisin serine protease family (S8) signature	505	521	IPR015500	-
	Sebi561g00009	717	PRINTS	Subtilisin serine protease family (S8) signature	154	167	IPR015500	-
	Sebi561g00009	717	Gene3D	-	592	717	-	-
	Sebi561g00009	717	Pfam	Peptidase inhibitor I9	16	85	IPR010259	-
	Sebi561g00009	717	FunFam	Subtilisin-like protease SBT1.5	84	301	-	-
	Sebi561g00009	717	CDD	Peptidases_S8_3	86	542	IPR034197	-
	Sebi561g00009	717	CDD	PA_subtilisin_like	297	414	-	-
	Sebi561g00009	717	Gene3D	Peptidase S8/S53 domain	90	588	IPR036852	GO:0004252\|GO:0006508
	Sebi561g00009	717	SUPERFAMILY	Subtilisin-like	112	579	IPR036852	GO:0004252\|GO:0006508
	Sebi561g00009	717	Pfam	Fibronectin type-III domain	620	716	IPR041469	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi561g00009	Sebi-Chr561	198228	202575	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi561g00009	16	716	Subtilisin-like Serine Gene Family	AT2G04160	46.306	0.0	648

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi561g00009	-		-	gmx:100794135	1107.82