Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi561g00008 ATGTCCACAAAGCTTGTACCATTTTTGTTGATTCTCATCACGTTTTTCTGTTCACTTTTAAGGCTCTCTTTCTTCCATGTTTCTGCCACTACTGATGATCAAGACAGAGAAGCAAGTGCTCTATTGAAGTGGAAAGCCAGCCTTGACAATCAAAGCCAAGCTTCCTTGTCTTCTTGGACCATAGTTACCACTCCTTGCAATTGGGGGGAAGAAATTGGTTGTGATGAAACCAACTCTGTGACCACCATAAATGTTGCAAATTTTGGACTTAAAGGTACTCTTTTTAGTCTCAATTTTTCATCCTTTCCTATGTTACTCACTCTGGACATAAGTAACAACTCATTTTATGGAACCATTCCTCAGCATATTGGTAACTTGTCCAGAATTACTCAACTGAAAATGGGTCATAATCTTTTCAATGGTTCCATCCCTCAAGAAATAGGGGCACTAAGAAGTCTAAGACAGCTTAATTTAAGAGGAAATAGACTTTCTGGTTCCATTCCCCCAACAATTGGAATGTTGAAAAGTCTTGTTATACTTGATTTGTCAATTAACTCTCTCTTTGGTGCAATCCCTTCAATTAGAAGCTTGAGAAATTTAGAACATCTTGTCCTCTTTAAAAACTGTATCTCTGGACCTATTCCTGAGGATTTGGGAAGACTCTCTTCTCTCATAAGAATCAAGTTGGTATCCAATAATTTGTCTGGGCCAATCCCATCTTCCATAGGAAACTTGGCCAATTTGAGCAGTCTTAGACTCTTTGATAATAAACTTGATGGAACAATACCTTCCACTCTTGGAAACTTGACAAAACTCATTTTTTTGTCCCTGAATATGAACAAGCTTCATGGATCAATTCCTGCTTCATTGGGAAACTTGATCAATCTAAAGAGGCTTAGCCTTTCAGAAAACTATCTTTCTGGACCTATTCCTTCTACCTTTGGAAATTTGACAAAGCTCACTGGGTTATTACTTTATAATAACAACCTTAATGGTAGCTTTCCAAAGAATAACCTTACCAATTTAGAAACCTTACAGCTAAGTGCAAATGATTTCACTGGCCATTTGCCACCACAGATTTGCCTTGGTGGATCACTTGTAAATTTTTCTGCTAACAAGAATCATTTCAGTGGTCCAGTTCCAACAAGCTTGAAGAATTGTTCCAAGCTTTTCAGACTCAACCTTGCAGACAATATGTTGATTGGAAATATTTCAGATGATTTTGGTATATATCCAGATTTGAGGCACATTGATCTGAGTAGCAATAATTTTTATGGCCACATTTTGCCAAATTGGGCAAAAAGCCATAATCTCATTGGCCTATTCATGTCTAACAACAATTTATCTGGTGGTATACCACCAGAACTAGGACAAGCATCAAAGTTACAATCACTTAAACTGTCTTCAAATCATCTGACAGGAAATATTCCAAAGGAACTTTGTAACTTGACCTCATTGTTTGAACTAAACATAAGTAACAATGAACTTTCAGGCAACATTCCCACAGAAATAGGATCCATGCAGAGACTTAAACACTTGGATCTGGCAGGAAATAATATGAGTGGCTCAATCCCAAAACAGGTTGGAGATCTGCTCAATTTAGTTTTGTTGAATTTGAGCAAGAATAAGTTCATAGGAAGCATTCCCTCTGAATTCAACCACTTGCATTCTCTTGAAAATCTTGATCTTAGTGGAAATTCCTTAGATGGACAAATACCAGAAGCTCTTGGGAAGTTGCAAAAATTGATCACATTGAACCTCTCACACAATAACCTCTCTGGGACCATTCCATCCAATTTTAAGGACATGATAAGCTTGATAAATGTTAACATCTCTAACAACCAATTAGAGGGTCCAATCCCTAACAATCCAGCCTTTCTTGAGGCTCCATTTGAAGCATTGAGAAATAATAAAGACTTGTGTGGTAATACCTCCCACTTGAAGCCTTGCAAAGAGTTGGTTCACAACAGAAAGAAAAATGTCTTGATATTGGCACTAGTCCTTACTCTGAGTGTGCTATTTTTGCTAATGTTTGTGATTGGAGTTTTATTATGTATTCAATGGGAAAAAGCTAGAAAAATCCAAAAGCAGGCTAGAAGAGAACAAACTCAAGATCTTTTCTCCATATGGAGTTATGATGGGAAAATGGTGTATGAAAATATCATTGAAGCCACAGAGGAGTTTGATAACAAATATCTCATTGGAAAAGGAGGATTTGGAACTGTTTATAAGGCTATCTTATCCTCTGGCCAGGTTGTTGCTGTGAAAAAACTTCATGCTGCAGTTGATGGGGAAATGCTCAATTTTAAAGCTTTCAAGAATGAGGTTCAAGTCTTGACAGAAATCAAGCATCGTAACATTGTGAAGTTGTATGGATATTGTCAACATCCACGTTATTCTTTTCTGGTTTATGAGTTCATAGAAGGAGGAAGCTTGGATAAAGTACTAAACAATGATACACAAGCAATGATGTTTGATTGGAACAAGAGGGTGAATGTTGTTAAAGGTGTCACAAATGCTCTATATCATATGCATCATGGTTGCTCTCTTCCTATTATTCATCGTGACTTATCAAGCAAGAATGTTCTTCTAGATTTGGAATATGAAGCTCGCATCTCAGATTTTGGAACAGCTAAAATTCTGAATCTTAATTCACACACTTCAACCACATTTGCAGGCACTTATGGATATGCAGCACCAGAGCTTGCTTATACTATGGAAGTGAATGAGAAATGTGATGTCTTCAGTTTTGGAGTGCTCTCTTTGGAAATAATGATGGGAAAGCATCCAGGAGATCTCATTTCTTCATTGTTGTCATCATCTACAACGCCAATTGAATCTAATTTGCTATTGAAGGATGTGATGGACCAACGGCTTCCTCGTCCAATGAGGCCAATTGTTAAGGATGTGATATTGATTGCAAAAATGGCATTAGCTTGTTTGAATGAAAGTCCACGTGCTCGCCCAACTATGGAAGAAGTGTATAACACATTTGTAATGTCAAAATCACCTATAATGGAGACATTCAACATCATCACACTTGGACAACTTCTAAATTATTGA 3063 0.3722 MSTKLVPFLLILITFFCSLLRLSFFHVSATTDDQDREASALLKWKASLDNQSQASLSSWTIVTTPCNWGEEIGCDETNSVTTINVANFGLKGTLFSLNFSSFPMLLTLDISNNSFYGTIPQHIGNLSRITQLKMGHNLFNGSIPQEIGALRSLRQLNLRGNRLSGSIPPTIGMLKSLVILDLSINSLFGAIPSIRSLRNLEHLVLFKNCISGPIPEDLGRLSSLIRIKLVSNNLSGPIPSSIGNLANLSSLRLFDNKLDGTIPSTLGNLTKLIFLSLNMNKLHGSIPASLGNLINLKRLSLSENYLSGPIPSTFGNLTKLTGLLLYNNNLNGSFPKNNLTNLETLQLSANDFTGHLPPQICLGGSLVNFSANKNHFSGPVPTSLKNCSKLFRLNLADNMLIGNISDDFGIYPDLRHIDLSSNNFYGHILPNWAKSHNLIGLFMSNNNLSGGIPPELGQASKLQSLKLSSNHLTGNIPKELCNLTSLFELNISNNELSGNIPTEIGSMQRLKHLDLAGNNMSGSIPKQVGDLLNLVLLNLSKNKFIGSIPSEFNHLHSLENLDLSGNSLDGQIPEALGKLQKLITLNLSHNNLSGTIPSNFKDMISLINVNISNNQLEGPIPNNPAFLEAPFEALRNNKDLCGNTSHLKPCKELVHNRKKNVLILALVLTLSVLFLLMFVIGVLLCIQWEKARKIQKQARREQTQDLFSIWSYDGKMVYENIIEATEEFDNKYLIGKGGFGTVYKAILSSGQVVAVKKLHAAVDGEMLNFKAFKNEVQVLTEIKHRNIVKLYGYCQHPRYSFLVYEFIEGGSLDKVLNNDTQAMMFDWNKRVNVVKGVTNALYHMHHGCSLPIIHRDLSSKNVLLDLEYEARISDFGTAKILNLNSHTSTTFAGTYGYAAPELAYTMEVNEKCDVFSFGVLSLEIMMGKHPGDLISSLLSSSTTPIESNLLLKDVMDQRLPRPMRPIVKDVILIAKMALACLNESPRARPTMEEVYNTFVMSKSPIMETFNIITLGQLLNY 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi561g00008 1020 SUPERFAMILY Protein kinase-like (PK-like) 708 998 IPR011009 -
Sebi561g00008 1020 FunFam Nuclear pore complex protein NUP107 34 193 - -
Sebi561g00008 1020 Gene3D Transferase(Phosphotransferase) domain 1 807 1008 - -
Sebi561g00008 1020 SUPERFAMILY L domain-like 489 641 - -
Sebi561g00008 1020 SUPERFAMILY L domain-like 58 335 - -
Sebi561g00008 1020 ProSitePatterns Tyrosine protein kinases specific active-site signature. 852 864 IPR008266 GO:0004672|GO:0006468
Sebi561g00008 1020 FunFam MDIS1-interacting receptor like kinase 2 807 1004 - -
Sebi561g00008 1020 Gene3D Phosphorylase Kinase; domain 1 688 806 - -
Sebi561g00008 1020 SMART LRR_typ_2 102 126 IPR003591 -
Sebi561g00008 1020 SMART LRR_typ_2 531 554 IPR003591 -
Sebi561g00008 1020 SMART LRR_typ_2 579 602 IPR003591 -
Sebi561g00008 1020 SMART LRR_typ_2 197 221 IPR003591 -
Sebi561g00008 1020 SMART LRR_typ_2 555 578 IPR003591 -
Sebi561g00008 1020 SMART LRR_typ_2 150 174 IPR003591 -
Sebi561g00008 1020 SMART LRR_typ_2 245 269 IPR003591 -
Sebi561g00008 1020 SMART LRR_typ_2 483 507 IPR003591 -
Sebi561g00008 1020 SMART LRR_typ_2 293 316 IPR003591 -
Sebi561g00008 1020 SMART LRR_typ_2 339 363 IPR003591 -
Sebi561g00008 1020 Gene3D Ribonuclease Inhibitor 194 244 IPR032675 -
Sebi561g00008 1020 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 397 1000 - -
Sebi561g00008 1020 Pfam Protein kinase domain 730 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi561g00008 1020 ProSitePatterns Protein kinases ATP-binding region signature. 734 757 IPR017441 GO:0005524
Sebi561g00008 1020 ProSiteProfiles Protein kinase domain profile. 728 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi561g00008 1020 Gene3D Ribonuclease Inhibitor 33 193 IPR032675 -
Sebi561g00008 1020 Gene3D Ribonuclease Inhibitor 338 653 IPR032675 -
Sebi561g00008 1020 FunFam Leucine-rich repeat receptor protein kinase EMS1 238 337 - -
Sebi561g00008 1020 FunFam Leucine-rich repeat receptor protein kinase MSP1 690 806 - -
Sebi561g00008 1020 Pfam Leucine rich repeat N-terminal domain 35 68 IPR013210 -
Sebi561g00008 1020 Pfam Leucine Rich Repeat 581 601 IPR001611 GO:0005515
Sebi561g00008 1020 Pfam Leucine Rich Repeat 295 317 IPR001611 GO:0005515
Sebi561g00008 1020 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 339 654 - -
Sebi561g00008 1020 SUPERFAMILY L domain-like 251 521 - -
Sebi561g00008 1020 Gene3D Ribonuclease Inhibitor 245 337 IPR032675 -
Sebi561g00008 1020 Pfam Leucine rich repeat 509 568 IPR001611 GO:0005515
Sebi561g00008 1020 Pfam Leucine rich repeat 105 163 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi561g00008 Sebi-Chr561 166463 169863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi561g00008 8 900 Receptor kinase-like Gene Family AT4G08850 44.421 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi561g00008 Pkinase 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi561g00008 - - gmx:100800924 1310.43