Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi560g00013 ATGGATAGTGGTTTTGAGGACTCACATGTTAACCTAGATGACGATATGGACATTCGTTTTAGCTATAGTGTTAGCTCCGATGGAGGTGAAAGTGATGAGCCAAATGATGTTGTTGATGCCAGTGTGTCACATGATGTTGCTAATGAAGATGTGTCACATGATGAGTTGGAAAATATAGCAGACTTAACAGCGGATGAAATTTCTAATATGGAGTTTTGCAGTGAAGAAAATGCATACAAATTTTATTTTGCTTATGCAAAGTGTCATGGCTTCGTTATTAGGAGAGATGATTTAGGTCGCGATAAGAACAATAGAATGGTATGGCGACAGTTTTTATGCAATAGGGCTAGATTGAGGGACCGAAAGTACCTGATGAAACATGATAGGAAAAGAGATCACAAACCTCTCACTCGTACAAAATGCAATGCTAGGTTGCGGGTTCGCCTTGACTATAGTACATCAAAATGGAAAGTGGTGGCATTTGATCCGGCTCATAACCATGCTTTAACCCCTTCGAAATTGGTGCCATGTATTTCTACCTATCGCGGCTTAAATGACGCAGACAAAGCTCAGGTGGAAGTCTTGCATTCCCATGGTGTTAGACCGTGTCAAATTTTGGGGTACATGTTGGCCCAAAAAGGAGGATATGTAGTAATGGATGGTGATTTTGCAATGAGGGAAGCCATCAAGTCGGTGTTTCCTAATGCTTCACACCGACTTTGTGCATGGCACTTGCAGAAGAATGCATGTGAGAACGTGAAGAAAAGGTTCTTTTTGGAGGATTTTCAAAAAGCAATGTATGCTAATATTACTCCAGAAGAATTTGAACAATATTGGGAGGAAGTAGTTGCAAAACATGGGCTTGAAGGAAACCGATGGGTGTCCAAAACATATGAGAACAAGTATATGTGGGTCACTGCTTATTTACGTGATAAGTTCTTTGCTCGCATAAGGACAACATCACAATGTGAAGGTGTTCATTCTTTCATTAAGGCATATATTAGAAGCAAAGATTCAATTATTGAGTTCTTGCATAACTTTGAGCATTGTTTAAGAGAATATAGGTACAATGAGATGATTTCTGATTTTAAGTCCTTTTATTTTGAACCTGTGTTGACAACATCTCTACACAAGATTGAGCGCGAGGCTTCAAAAATTTTCACCTTGGATATTTTTAAAGAAGTCAGAATTGAGATTGAGAAGGCTGGAGCAATGAATGTGATTGAGAGAGTAGAATGTGGTGAGATAGTCAAGTTCAATATGAACAAGTATGGTCAACCAAATAGGCAAAGGCCTGTACTTTATGACAAAGTTAATAGTAAATTTTCATGTGATTGTATGCTTTTTGAGTCATGTGGTATTCCTTGTTCCCATATCATATGTTCTATGAGACTTGAGCATATGCAATCAACTCCTAAGAGTTTGGTATGTACACGTTGGACAAAAGATGCTAAAGGTGCTTATATTTCATCGCTCCCTGCTGAGGAAATGGATAATGATATGATGACAGTGGCTCGATTTGGGTTTTTATCAGCATTATGTAACAAACTTTGTGATATTGGTTCCAAAAAGCGTGAGCTGTTTAATACCGTCAGAATTGAAATATTGAAGCTAATAGACAATTTTCAGAAACAAGGCTATTCAGTCACCGAGCATAATGTTTCTGAAAATGATGTCGGTGATCCCAATGTTGTTCGGACAAAAGGTGCTCCTACTAAGAAAAATAGAAGGAGAAAAGCCAGGAAGTGTTCAAACTGTAGCAAGACTGGACATATGGTCAGGACATGTCCTAGGATTGTTGCTAACGATGATGATCTTAGTATGCATAATGGTTCATCGGGTTCAGAATCTGAGGGGATTATAAGAGAAGAAGAGAGTTTAGATAAAGGTGTGTCATCTGATGAAAAAGATGTGCAAAACATTGAACAAGAGCGCCAAATTACTGGATCTAATGAATATAAAAGGCAAGTTAAACATAGTGGTTGCAGTAACATGAAGGAAAAGAGAGTTAAGAACTTGACACAGAAAACCACTAATGACTGTAATTTGGATAAAATGAGATGTAATGAAGGGTTTAGGGTACAGGGCAGCAACCATGTTCCTCACAGTGTTGGGAGTAATCAAAATAAAAGGAAAATGGCATTTACTGATGAGATTGACAATAATGAAAAGATTGTGAAGTCCTCTATGAAAAATTTAAAGGAGGACTGTAAAAAGAAAGTGGCATTTATTGATGAGATTGACAATAATGAAAAGATTGTGAATTCCTCTATGCAAAATTCAAGGGAGGACTATAAAAAGAAAGTGGCAATTACTGACGAGATTGACAATAATAAAAAGACTGTGATGCAAAATTCAAGGGAGGACTGTGAAATGAAACCTGTTGTATCAGGCAGTATGGGTAATGAAGAAATTCGTGAAGGGGTGGTCGTGTTACCCCCACAACATAGTACAACACCTGGTTTAGGGAGAATGCCTCCTTATTTTGGAGTGGTTCCTTGGTATCTACATTATCCCCAAGCTCCATTTCCATCGCAATTTGGGCAGAATTTTAATGGAGTCCCTAATTTGAACAGTGACCGAAATTTGTCTCATCTGCTTCAGCAATTCATAAATAATGGAAGTGGAACAGGTGGAAAGCCTGACCACCCTCAGTAA 2658 0.3822 MDSGFEDSHVNLDDDMDIRFSYSVSSDGGESDEPNDVVDASVSHDVANEDVSHDELENIADLTADEISNMEFCSEENAYKFYFAYAKCHGFVIRRDDLGRDKNNRMVWRQFLCNRARLRDRKYLMKHDRKRDHKPLTRTKCNARLRVRLDYSTSKWKVVAFDPAHNHALTPSKLVPCISTYRGLNDADKAQVEVLHSHGVRPCQILGYMLAQKGGYVVMDGDFAMREAIKSVFPNASHRLCAWHLQKNACENVKKRFFLEDFQKAMYANITPEEFEQYWEEVVAKHGLEGNRWVSKTYENKYMWVTAYLRDKFFARIRTTSQCEGVHSFIKAYIRSKDSIIEFLHNFEHCLREYRYNEMISDFKSFYFEPVLTTSLHKIEREASKIFTLDIFKEVRIEIEKAGAMNVIERVECGEIVKFNMNKYGQPNRQRPVLYDKVNSKFSCDCMLFESCGIPCSHIICSMRLEHMQSTPKSLVCTRWTKDAKGAYISSLPAEEMDNDMMTVARFGFLSALCNKLCDIGSKKRELFNTVRIEILKLIDNFQKQGYSVTEHNVSENDVGDPNVVRTKGAPTKKNRRRKARKCSNCSKTGHMVRTCPRIVANDDDLSMHNGSSGSESEGIIREEESLDKGVSSDEKDVQNIEQERQITGSNEYKRQVKHSGCSNMKEKRVKNLTQKTTNDCNLDKMRCNEGFRVQGSNHVPHSVGSNQNKRKMAFTDEIDNNEKIVKSSMKNLKEDCKKKVAFIDEIDNNEKIVNSSMQNSREDYKKKVAITDEIDNNKKTVMQNSREDCEMKPVVSGSMGNEEIREGVVVLPPQHSTTPGLGRMPPYFGVVPWYLHYPQAPFPSQFGQNFNGVPNLNSDRNLSHLLQQFINNGSGTGGKPDHPQ 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi560g00013 885 Pfam MULE transposase domain 212 248 IPR018289 -
Sebi560g00013 885 MobiDBLite consensus disorder prediction 570 584 - -
Sebi560g00013 885 Pfam FAR1 DNA-binding domain 80 170 IPR004330 -
Sebi560g00013 885 ProSiteProfiles Zinc finger SWIM-type profile. 429 467 IPR007527 GO:0008270
Sebi560g00013 885 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 62 537 IPR031052 GO:0006355
Sebi560g00013 885 MobiDBLite consensus disorder prediction 603 667 - -
Sebi560g00013 885 MobiDBLite consensus disorder prediction 618 652 - -
Sebi560g00013 885 SUPERFAMILY Retrovirus zinc finger-like domains 569 601 IPR036875 GO:0003676|GO:0008270
Sebi560g00013 885 ProSiteProfiles Zinc finger CCHC-type profile. 581 598 IPR001878 GO:0003676|GO:0008270
Sebi560g00013 885 SMART 26again6 442 469 IPR006564 GO:0008270
Sebi560g00013 885 MobiDBLite consensus disorder prediction 553 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi560g00013 Sebi-Chr560 240491 244397 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi560g00013 FAR1 2.2e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi560g00013 - - ccaj:109811679 466.463