Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi55g00067 ATGTCAGCTAACAAGAATTCTGCAGAAAATGGGTCGGGAAGGAACAAAGGGAAAGAAGTTGCGAACGACAACATGGAAGTTCCTCCAGCCACTAACGCTGAAGAGGCCCAAGAGGATCCCGATTCAGGCAAGAGGAAGCGGTACCACCGCCACTCTCAGCACCAGATACAACATATGGAAATGTTCTTCAAGGAGTGCCCTCACCCATATGACAAGCAAAGGAAAGCCCTGGGCGATGAGGTTGGGCTCGACCCTTTGCAAATCAAGTTTTGGTTCCAAAACAAGCGTACCCAAATGAAGGCTCAACAAGAACGCCATGAGAATGCTCTTTTGAAGGGTGAGAACGAAAAGCTTCGTGCTGACAATGCTAGGATGTTGGGAATGACAGCGGAAATGATGAGAAAACTTGTGACACCATTTTATTACAATCACATGCCTTCGTGTACGCTTGATCTTGGGGGTGGTAACTATGTCCCACAGTCAGGCACGATAGCGGAAATGTATGGCGGTGGTAACTTTCTCATAAGGTCACTCCCTGTTCCTACAGAACGTGGAGCATACTAA 564 0.477 MSANKNSAENGSGRNKGKEVANDNMEVPPATNAEEAQEDPDSGKRKRYHRHSQHQIQHMEMFFKECPHPYDKQRKALGDEVGLDPLQIKFWFQNKRTQMKAQQERHENALLKGENEKLRADNARMLGMTAEMMRKLVTPFYYNHMPSCTLDLGGGNYVPQSGTIAEMYGGGNFLIRSLPVPTERGAY 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi55g00067 187 Coils Coil 101 121 - -
Sebi55g00067 187 Gene3D - 30 118 - -
Sebi55g00067 187 SMART HOX_1 43 106 IPR001356 GO:0003677
Sebi55g00067 187 MobiDBLite consensus disorder prediction 1 54 - -
Sebi55g00067 187 ProSiteProfiles 'Homeobox' domain profile. 42 102 IPR001356 GO:0003677
Sebi55g00067 187 FunFam Homeobox-leucine zipper protein HDG1 31 118 - -
Sebi55g00067 187 Pfam Homeodomain 45 100 IPR001356 GO:0003677
Sebi55g00067 187 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 42 129 IPR042160 -
Sebi55g00067 187 SUPERFAMILY Homeodomain-like 39 106 IPR009057 -
Sebi55g00067 187 CDD homeodomain 45 103 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi55g00067 Sebi-Chr55 1840242 1841247 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi55g00067 16 183 Homeobox Transcription Factor Family AT4G04890 40.376 6.78e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi55g00067 Homeodomain 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi55g00067 K09338 - jre:108990742 173.711