Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi55g00061 ATGGAAATGTTCTTCAAGGAGTTCCCTCACCCATATGACAAGCAAAGGAAAGCCCTGGGCGATGATGAGCTTGGGCTAGACCCTTTGCAAACCAAGTTTTGGTTCCAGAATAAGCCTACCCAAATGAAGGCTCAACAAGAACGCCATGAGAATGCTCTTCTGAAGGCTGAGAACGAAAAGCTTCGTGCTGACAATGCTAGGTACAAGGAGGCACTTAGTCATGCTACATGCCCTACCTGTGGAGGGCCCTCTGTTGGTGAAATGTCCTTTGACAAACAACACTTGAGATTGAGAATGCCCGATTAG 306 0.4739 MEMFFKEFPHPYDKQRKALGDDELGLDPLQTKFWFQNKPTQMKAQQERHENALLKAENEKLRADNARYKEALSHATCPTCGGPSVGEMSFDKQHLRLRMPD 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi55g00061 101 CDD homeodomain 1 38 IPR001356 GO:0003677
Sebi55g00061 101 ProSiteProfiles 'Homeobox' domain profile. 1 45 IPR001356 GO:0003677
Sebi55g00061 101 Pfam Homeodomain 1 43 IPR001356 GO:0003677
Sebi55g00061 101 SUPERFAMILY Homeodomain-like 2 52 IPR009057 -
Sebi55g00061 101 Coils Coil 42 71 - -
Sebi55g00061 101 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 97 IPR042160 -
Sebi55g00061 101 Gene3D - 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi55g00061 Sebi-Chr55 1776884 1777397 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi55g00061 1 97 Homeobox Transcription Factor Family AT4G04890 72.449 4.77e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi55g00061 Homeodomain 2.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi55g00061 K09338 - cpap:110806758 156.762