Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi55g00047 ATGGAGAGTGACTGTATTGAGGTTGAGGACATGGAGATTGAAGTCCTCCCTTCAATGTGGCCTGAAGATGTTGGCACTGATGTTGGAAAACAGTTTAATATAGAAAAGCCTGGAAGGGACCAAGATATGTTAGAGGAGGTTACAATCTTAGAGGAGCCAACTATAGCTGATTTTCAGCGTCTCATGGAACTTACAAATTATACAGATAAAGGGTCTTCTCAGTTGGCTTATCTTATGAAACATTGGGAGTATAAGCAGGCCAATGCTGTGCGTCTTCTCAGGGAAGAGCTTGATAACCTTAGCAAGCAAAGGCAGGAAGTTGAGCTTAGAAAGTTGGAGATACTGAAAGACAATCGATTTGAGGAGGAAAATTATGGGGGTGATAAACGCCCGGTTTCTATATTGGATGAAGTTTACTATACATGGCAAGATGTACCTGTACCACTGAGGAAAAGTGATGTTGTTGTTCAAAACAAGAGAGTTGAAATTGATGCTGAGTATGATACTGTTGTGTACTGGAAACAGCGGGCTATGGATTTTGAAAGACAGTTGGAGGCAAGTATTCAGAGAGAGCAGATACTTGTGGAGAAGTTGCAAGAAAGTATAAAGAATTTTGAAAGGCAGTCATCACCTGTGGAAGAACTCTCGCAGATTCTGAAGAGGGCTGATAATTTCTTACATTTTATACTTCAGAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAATTGCGCTATCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACGGATGTTGAAATTTTCACAGGATCTGGTGTTAAGGAATCTCAAGATTTTAAGAGAGAAGTGATGGAGAAAGGGATACCTGCAAAAAAGGAAATTACTTTTGAGACAGAATTATTTGGGTCAAAGACATTCTTGATATATGTAGAACCTGTCTTTAGCAAGGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCAAAGCTGAGGGAAGAGATTGCAGTTCAGAAAGCCAAGGAAACTGAACTTAATAAGACCATTCACATTACAGAGGAGACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTTGATCGGGAGCAAAGACAGCTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGCTATGAAATTGGAAGCTACCAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATGTTAACCTTAGAAGGAAATGTGGCAGATGATATACCTATTGAGGTCACTGGAGATGTTTTAAGGATTCGGCAGATTCTCACAAATTTAGTCAGCAATGCGGTCAAGTTTACACATCAAGGCAAAGTTGGTATAAACCTTTACGTTGTTCCAGAACCACCTTTTGCTAAAGCAGAAGAAGGCCATCAAAAGATGACCACAGACCAGTCAACTATAGCAGCCAATGGGGTGAAGGAAGATAAACATCAGTTAACACCTCGAAGTAGATGTGATCAAAATCTTGATGATACCGATGAGGGAACTCATTCAACTGAAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGAATTGGAATACCAGAAAAGGCTATACCAACTTTATTCAGAAGATACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGCTAATGGGTGGTCGTCTAACAGTGTCTAGCAAAGAACATTGTGGTTCTACCTTCACCTTCATACTTCCATACAAGGTTTCAACCACTTGTGATAATTCTGATGACCCTGATGAGCTTTCAGATGTGGATAATAATGAAGATGATACAACAGAGGGCTTCTTCCAATTCCAGCCACGCACTTTGGGCTCTCTGTTCTCTTCTAATGGATCTAGCAGGCCCCAAAATTTATTACCAGGCTACAGAAGCTCACATAAGTTTAATGGGTTTTCAGAGAATTCTTACTCATTCCCCTCTACTAACATAGGATCAAAAGGGACAAATTCAGTTGAGGATGCATCTTCAGCTATTGTTGATGCTCCAGAGATGTCTGAATCAACAAGTTCATCATGTTACAGCCCAGAAACAAAGGATGAAACTTTAGTTAATAGAAACAAACAAAACCAAGATAAGGCACATGCTCGGTTACAGAATGGCAGTGTAGATTCTTGTCAACTTAAGAAGGCAAGTAGAGAAATGAATGCAGCAACAACGTTAAGTGAACCAATGCAAACATGTCAGGGTCAAGGGAAGGCAGACATAGCTTCCCAATGTGTTATTAGAAGTAGTAACACTAGCATGTCCTCAGAAGTAACCACATCCACGTTAAAGCCAAAGATTCTTCTTGTTGAAGATAACAAAATCAATGTCATGGTGACACAGTCAATGATGAAGCGGTTAGGTTATAGTATGGATGTTGTGAATAATGGAGTGGAAGCCTTGCGTGCAGTTCAGCGCCATACTTATGATGTCATTCTGATGGATGTTTTCATGCCAGTTATGAATGGTCTTCAAACAACAAAATTGATTCGGTCTTATGAGGAAACGGGCAATTGGGATGCTGCAAGAAAATCTGGAATTGAACTAAGTTTATCAGCATCAGAGGAATGTTCTGTAGCACCAAAAAAACGGATCCACATTATCGCGATGACAGCAAATACAATGTCAGAGAGTGCTGAAGAATGTTTTGCAAATGGAATGGATTCATTTGTGTCAAAACCTGTGACTTTCCAAAAATTGAAAGATTGTCTGGAACAGTACCTAAGGTGA 2955 0.4017 MESDCIEVEDMEIEVLPSMWPEDVGTDVGKQFNIEKPGRDQDMLEEVTILEEPTIADFQRLMELTNYTDKGSSQLAYLMKHWEYKQANAVRLLREELDNLSKQRQEVELRKLEILKDNRFEEENYGGDKRPVSILDEVYYTWQDVPVPLRKSDVVVQNKRVEIDAEYDTVVYWKQRAMDFERQLEASIQREQILVEKLQESIKNFERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGIPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMISSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPIEVTGDVLRIRQILTNLVSNAVKFTHQGKVGINLYVVPEPPFAKAEEGHQKMTTDQSTIAANGVKEDKHQLTPRSRCDQNLDDTDEGTHSTETTVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSTTCDNSDDPDELSDVDNNEDDTTEGFFQFQPRTLGSLFSSNGSSRPQNLLPGYRSSHKFNGFSENSYSFPSTNIGSKGTNSVEDASSAIVDAPEMSESTSSSCYSPETKDETLVNRNKQNQDKAHARLQNGSVDSCQLKKASREMNAATTLSEPMQTCQGQGKADIASQCVIRSSNTSMSSEVTTSTLKPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVEALRAVQRHTYDVILMDVFMPVMNGLQTTKLIRSYEETGNWDAARKSGIELSLSASEECSVAPKKRIHIIAMTANTMSESAEECFANGMDSFVSKPVTFQKLKDCLEQYLR 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi55g00047 984 FunFam Probable histidine kinase 1 437 652 - -
Sebi55g00047 984 MobiDBLite consensus disorder prediction 740 760 - -
Sebi55g00047 984 Gene3D - 834 984 - -
Sebi55g00047 984 MobiDBLite consensus disorder prediction 542 565 - -
Sebi55g00047 984 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Sebi55g00047 984 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 436 IPR036097 GO:0000155|GO:0007165
Sebi55g00047 984 Gene3D PAS domain 213 348 - -
Sebi55g00047 984 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Sebi55g00047 984 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 648 IPR036890 -
Sebi55g00047 984 FunFam Histidine kinase 5 213 348 - -
Sebi55g00047 984 PRINTS Bacterial sensor protein C-terminal signature 633 646 IPR004358 GO:0016310|GO:0016772
Sebi55g00047 984 PRINTS Bacterial sensor protein C-terminal signature 574 588 IPR004358 GO:0016310|GO:0016772
Sebi55g00047 984 PRINTS Bacterial sensor protein C-terminal signature 609 627 IPR004358 GO:0016310|GO:0016772
Sebi55g00047 984 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 647 IPR003594 -
Sebi55g00047 984 MobiDBLite consensus disorder prediction 657 671 - -
Sebi55g00047 984 Coils Coil 181 208 - -
Sebi55g00047 984 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Sebi55g00047 984 MobiDBLite consensus disorder prediction 544 565 - -
Sebi55g00047 984 Gene3D - 437 654 IPR036890 -
Sebi55g00047 984 SUPERFAMILY CheY-like 840 984 IPR011006 -
Sebi55g00047 984 Coils Coil 342 362 - -
Sebi55g00047 984 MobiDBLite consensus disorder prediction 655 674 - -
Sebi55g00047 984 ProSiteProfiles Response regulatory domain profile. 841 983 IPR001789 GO:0000160
Sebi55g00047 984 Coils Coil 90 117 - -
Sebi55g00047 984 FunFam Histidine kinase 5 834 984 - -
Sebi55g00047 984 CDD REC_hyHK_CKI1_RcsC-like 842 979 - -
Sebi55g00047 984 SMART HKATPase_4 482 649 IPR003594 -
Sebi55g00047 984 SMART REC_2 840 979 IPR001789 GO:0000160
Sebi55g00047 984 Gene3D - 359 436 - -
Sebi55g00047 984 CDD HATPase_EvgS-ArcB-TorS-like 487 646 - -
Sebi55g00047 984 FunFam Putative histidine kinase 5 359 436 - -
Sebi55g00047 984 Pfam Response regulator receiver domain 842 910 IPR001789 GO:0000160
Sebi55g00047 984 ProSiteProfiles Histidine kinase domain profile. 378 649 IPR005467 -
Sebi55g00047 984 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 13 983 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi55g00047 Sebi-Chr55 1390094 1396543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi55g00047 1 984 Histidine Kinase Gene Family AT5G10720 57.874 0.0 1102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi55g00047 HATPase_c 7.3e-28 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi55g00047 - - gmx:100801640 1684.08