Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi55g00021 ATGCCTTTGAGGAAGAACTCTAACTTGGTCAGAAGCATTACTGCTAAGGCATGTTTCATGTGTGTAGTCTCTTGTTCACAATTTCATCAATTAAGTGTTGAACCAGGTGACGTTCCACGGGTTGATGGGCAGTTGACAGTGTTAAGGGCATTTGGTGACAAAAGCCTGAAGAAACATTTGAGCTCAGAACCATATGTGACAGTGGAGATAATAGATGATGATGCAGAGTTTGTTATATTAGCCAGTGATGGGTTATGGAAGCACTTTGGTAAATATGGTGAGATTACGGATTCTGTCATCATGAAGGACAGGAAAACTGGGCAGCCTCGTGGATTCGGGTTTATAACATATGCAGATCCCTCTGTGGTTGATAAAGTCATTGAGGACTCTCATATCATCAATGGCAAACAAGTTGAAATTAAGCAGACAATACCACGGGGAGCTGTTGGCTCTAAGGATTTTAAGACAAAGAAAATTTTTGTAGGTGGGATTCCTTCAAATGTGACTGAAGGTAGGTTGCCTCGATAG 528 0.4148 MPLRKNSNLVRSITAKACFMCVVSCSQFHQLSVEPGDVPRVDGQLTVLRAFGDKSLKKHLSSEPYVTVEIIDDDAEFVILASDGLWKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDSHIINGKQVEIKQTIPRGAVGSKDFKTKKIFVGGIPSNVTEGRLPR 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi55g00021 175 ProSiteProfiles PPM-type phosphatase domain profile. 1 175 IPR001932 -
Sebi55g00021 175 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 138 IPR000504 GO:0003723
Sebi55g00021 175 SUPERFAMILY RNA-binding domain, RBD 83 173 IPR035979 GO:0003676
Sebi55g00021 175 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 145 IPR000504 GO:0003723
Sebi55g00021 175 Pfam Protein phosphatase 2C 32 89 IPR001932 -
Sebi55g00021 175 Gene3D - 54 148 IPR012677 -
Sebi55g00021 175 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 84 171 - -
Sebi55g00021 175 SMART rrm1_1 65 141 IPR000504 GO:0003723
Sebi55g00021 175 SUPERFAMILY PP2C-like 38 97 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi55g00021 Sebi-Chr55 685690 686775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi55g00021 35 87 PP2C-type Phosphatase Gene Family AT3G15260 92.453 1.50e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi55g00021 K12741 K14314 gmx:113001701 167.933