Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi55g00020 ATGGCTGGTGCTTCTTCTTCTTCTGCTGCTGATCCTCTTATTACTACTAGCGCCACCACTAACCACAATAATGAGACTTGTTCCAACAATGAAACTAGTAATAATAAGATGTACAAAGGGGTGAGGAAGAGAAAATGGGGCAAATGGGTTTCTGAGATCAGGCTTCCCAATAGCCGTGAGCGTATTTGGTTGGGCTCTTACGATACCCAAGAGAAGGCAGCCCGGGCCTTTGATGCAGCCCTTTACTGCTTACGTGGACGCCGGGCTAATTTCAATTTTCCTGACACCCCTCTCAATTTGGAGATCAATGTGGCTGTTCATCACCAATCTCTTTCCCATCAGGAAATTCAAGAGGTTGCTGCAAAGTTTGCCAATGAACCACCAATGGAGCTGACTCATGAAGAGGAAGAAGAACCGTCAGAGTCGCAACGTGGTGCCAATTCATTTGGGTCATTTGAGTCAAATAATTCTAAATCAAACGACAGCGTAACGGAGAGTACTTACCCTCATCTGTATGATTATGATGGGTCTATGCAAGTGGACTTGAGGACCATGGATTGGACCTTTTCGGACATGTTGGATGACTTGAATAGCTCCGATTTTAGCCTCTATTCTGAGCCAGACAAGATGCAGTTCTCGGGTGAGTTATTATATTCCACTCAACCAACAGTACCGTTTTTTGAGGATAATAATGGGGGAGAAATTGAAGGTGATGATGATGCCTTCTCTAACCATTCATTCCTTTGGAGTTGGAACTTTTGA 762 0.4423 MAGASSSSAADPLITTSATTNHNNETCSNNETSNNKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGRRANFNFPDTPLNLEINVAVHHQSLSHQEIQEVAAKFANEPPMELTHEEEEEPSESQRGANSFGSFESNNSKSNDSVTESTYPHLYDYDGSMQVDLRTMDWTFSDMLDDLNSSDFSLYSEPDKMQFSGELLYSTQPTVPFFEDNNGGEIEGDDDAFSNHSFLWSWNF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi55g00020 253 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Sebi55g00020 253 FunFam Ethylene-responsive transcription factor 2 36 95 - -
Sebi55g00020 253 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Sebi55g00020 253 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Sebi55g00020 253 Pfam AP2 domain 38 86 IPR001471 GO:0003700|GO:0006355
Sebi55g00020 253 MobiDBLite consensus disorder prediction 129 164 - -
Sebi55g00020 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 191 - -
Sebi55g00020 253 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Sebi55g00020 253 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Sebi55g00020 253 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Sebi55g00020 253 MobiDBLite consensus disorder prediction 1 35 - -
Sebi55g00020 253 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Sebi55g00020 253 MobiDBLite consensus disorder prediction 143 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi55g00020 Sebi-Chr55 681368 682129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi55g00020 32 210 AP2-EREBP Transcription Factor Family AT1G74930 48.603 4.01e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi55g00020 AP2 6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi55g00020 - - gmx:112999363 239.58