Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi55g00012 ATGACTACTAAAAAGAGTACATGGAAGTCTGTGATCTTGATCTTAAGTTGTTACAAGATTAAATTCCCATTGGAGGAATCAGAGAAACAGGATTTAAAACAGGGTTCTTTCCATAGGCTATTGCTATCAGATATAAGCAATTCAAGCTCCTCTCAGGCAATTGAAGATCTTTCAATTTCCCTCGCTGGCTCTAAACTTTACACATTCACCCTTGAGGAGCTAAGAGAAGCAACACATAATTTCACATGGAGTAACATGCTTGGTGAAGGTGGGTTTGGACCTGTGTACAAGGGGTTTTTTGATGACAAACTTAGGCGTGGGTTGAAGGCTCAGACTGTTGCTGTGAAACGATTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAACTGAGGCATCCACATCTTGTTAAGTTAATTGGGTACTGTTATGAGGATGAACACAGGCTTTTGGTGTATGAATACATGCCAAGAGGCAGCTTGGAGAATCAACTCTTCAGAAGATACTCTGCTGCCATGCCATGGTCAACCAGGATGAAAATTGCTTTGGGAGCGGCTAAGGGTCTGGCCTTCCTTCACGAAGCAGATAAACCTGTAATTTACAGGGATTTCAAAGCTTCAAACATCTTACTAGACTCAGACTATACAGCTAAACTCTCAGACTTTGGTCTAGCTAAGGATGGTCCTGAAGGAGAAGAGACACATGTAACAACAAGGATAATGGGAACACATGGCTATGCTGCTCCTGAGTACATCATGACAGGTCACCTCACAACGAAGAGTGATGTGTATAGCTACGGAGTGGTTCTGTTGGAATTGCTAACTGGAAGACGGGTAGTGGATAAGTCCCTAGCAAATCGAGGAAAGAGCTTGGTGGAATGGGCAAGGCCTATGTTGAGAGATCAGAAAAAGCTGCACCGTATCATAGACCGTAGACTTGAAGGTCAATTCCCTACAAAAGGAGCCATGAAGGTTGCTATGTTGGCTTTTAAATGCTTGAGTCACAACCCAACTCCAAGGCCTTCCATGAGTGATGTGGTGAAGGTATTGGAACCACTTCAAGACTTTGACGATGTTCTCATAGGACCATTTGTCTATGTTGCCGTAAAAGAAAATGGAGACAAAGATAAAATATAG 1161 0.4307 MTTKKSTWKSVILILSCYKIKFPLEESEKQDLKQGSFHRLLLSDISNSSSSQAIEDLSISLAGSKLYTFTLEELREATHNFTWSNMLGEGGFGPVYKGFFDDKLRRGLKAQTVAVKRLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDEHRLLVYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGEETHVTTRIMGTHGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSLANRGKSLVEWARPMLRDQKKLHRIIDRRLEGQFPTKGAMKVAMLAFKCLSHNPTPRPSMSDVVKVLEPLQDFDDVLIGPFVYVAVKENGDKDKI 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi55g00012 386 CDD STKc_IRAK 87 361 - -
Sebi55g00012 386 SUPERFAMILY Protein kinase-like (PK-like) 57 359 IPR011009 -
Sebi55g00012 386 ProSiteProfiles Protein kinase domain profile. 81 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi55g00012 386 FunFam Probable serine/threonine-protein kinase PBL8 164 373 - -
Sebi55g00012 386 FunFam Serine/threonine-protein kinase BIK1 47 163 - -
Sebi55g00012 386 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Sebi55g00012 386 PANTHER OS01G0588500 PROTEIN-RELATED 50 362 - -
Sebi55g00012 386 Gene3D Phosphorylase Kinase; domain 1 43 163 - -
Sebi55g00012 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Sebi55g00012 386 Gene3D Transferase(Phosphotransferase) domain 1 164 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi55g00012 Sebi-Chr55 384382 386651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi55g00012 68 358 Glycoside Hydrolase AT3G07070 53.741 3.04e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi55g00012 PK_Tyr_Ser-Thr 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi55g00012 - - gmx:100802636 687.952