Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi55g00010 ATGTCGACGGTGTACGTTCTGGAACCGCCGACGAAGGGGAAGGTTGTGGTGAACACGACGCGGGGCCCTCTGGACATTGAGCTGTGGCCCAAAGAGGCTCCCAAAGCCGTCAGGAACTTCGTCCAACTCTGCCTCGAAGGCTATTACAACAATACCATCTTCCACCGTATCATCAAGGACTTCCTCATCCAAGGTGGCGACCCCACCGGCACCGGCACCGGTGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCACGTATCAAATTCAAGCACAGAGGTTTGGTTGCAATGGCTAATGCTGGATCAGCGAATTCCAATGGAAGTCAGTTTTTCATTACTCTCGACCGTTGTGACTGGCTTGATCGGAAGCATACCATTTTCGGAAAGGTCACGGGAGATACAATGTATAATCTGTTGAGACTGGGTGAAGTTGAAACCGATAAGAATGACCGGCCTTTAGATCCAACCCCGAAGATATTGTCAGTTGAGGTATTGTGGAACCCATTTGAAGATATTGTTCCAAGAACACTTCAGACTCAGAAACCTCAGATTAAAGCTACACCTGATACAGACAGTAAGGAGTCAAAGAAGAAAGGGGTCAAAAATTTGAGCTTGCTTTCATTTGCGGAAGAAACTGAAGAAGAGGAAAAAGAATTGGCATTGAGTTCATCTGGGGGTAAAGCAACAAGGGATCTGCAGTTATCTGTAAGGGATGCCCTTAACTCAAAGAAAGAAGAGCCTCAGAAAGATTCAGAAGCTGGAAGTGCCAGTTCAAAGGACCATGATACGTCAGCAGCCAGATCCAGTGCTGTAAGTGATGATGAGGATCAACCAAGAGTGGAAAAATTGTCCTTGAAGAAAAAGGGAATAGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCAGATGCAGATTTGCAGCTATTGAATGAAGCTGAGAGAGGAAGACAGTTGCGGAAGCAAAAGAAACGCAGACTTCAGGGGCGTGAAGATGAAGTTCTGGCAAAACTTGAAAAATTTAAGAATGCTTTATCAGCAAAGGCGACAGCAACAACTGGTGAATCTGGACATGTTAATGATGACGAATTATCTGACTGGAAAAGTGTTAACTTAAAATTTGCCGCTGAGACTGGCAAGGACCGCATGTCTCGCAATGAGGACCCAAATGACTATGTTGTGCATGACCCTCTTTTGGAGAAGGGGAAAGAGAAGTTCAATAGGATGCAAGCCAAACAAAAGAGGCAAAAACGGGAGTGGGCTGGGAGATCACTTACTTGA 1290 0.455 MSTVYVLEPPTKGKVVVNTTRGPLDIELWPKEAPKAVRNFVQLCLEGYYNNTIFHRIIKDFLIQGGDPTGTGTGGESIYGGVFADEFHSRIKFKHRGLVAMANAGSANSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPTPKILSVEVLWNPFEDIVPRTLQTQKPQIKATPDTDSKESKKKGVKNLSLLSFAEETEEEEKELALSSSGGKATRDLQLSVRDALNSKKEEPQKDSEAGSASSKDHDTSAARSSAVSDDEDQPRVEKLSLKKKGIGSEARAERMANADADLQLLNEAERGRQLRKQKKRRLQGREDEVLAKLEKFKNALSAKATATTGESGHVNDDELSDWKSVNLKFAAETGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMQAKQKRQKREWAGRSLT 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi55g00010 429 MobiDBLite consensus disorder prediction 406 429 - -
Sebi55g00010 429 MobiDBLite consensus disorder prediction 270 304 - -
Sebi55g00010 429 MobiDBLite consensus disorder prediction 243 305 - -
Sebi55g00010 429 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Sebi55g00010 429 Coils Coil 402 422 - -
Sebi55g00010 429 MobiDBLite consensus disorder prediction 243 261 - -
Sebi55g00010 429 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 180 - -
Sebi55g00010 429 MobiDBLite consensus disorder prediction 181 203 - -
Sebi55g00010 429 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Sebi55g00010 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Sebi55g00010 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Sebi55g00010 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Sebi55g00010 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Sebi55g00010 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Sebi55g00010 429 CDD cyclophilin_CeCYP16-like 8 180 - -
Sebi55g00010 429 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Sebi55g00010 429 Gene3D - 2 183 IPR029000 -
Sebi55g00010 429 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 219 IPR044666 -
Sebi55g00010 429 SUPERFAMILY Cyclophilin-like 14 186 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi55g00010 Sebi-Chr55 285009 291639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi55g00010 9 173 U-box Gene Family AT5G67530 48.485 8.74e-43 157