Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi559g00037 ATGGATAGGGCCGTGAATCCGTGTGAGAACGGGGAACAGTCACAGATGGTGGTGGTTCCCATGCAGGTAGATGGGGTTCACTATTCCAATGGAGCTTCGGGTTCTGAAGAAGGGGAAGAAGCTCCACCCACTACTACTTCTGGGTTTTCTGGGGCCAATGCTTCTCTTCCGCTCTCTCGCGCCAGTGAACTCACCATTTCCTTTGAAGGAGAGGTCTATGTTTTCCCAGCGGTTACGCCTGAAAAGGTGCAGGCTGTATTATTACTCTTGGGAGGGCAGGAGATGCCCAATAGCATCCCCACCTCTGACTTTTTGCTGCAGCAAAACTGTCAGGACATTGGGGGAATAAGTGATCCTTCCTGCAGTTCAAAGCTTTCACGGAGAATTGCATCACTTGTTAGGTTTCGTGAAAAAAGAAAAGAGAGATGTTTTGAGAAGAAAATTCGGTATACTTGCCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAGTTTGCATCATTGAAGGAAGATTACAAATCTCCTGCTGAAAACTTGGATTCTAGCAATGGTACTCCTTGCCCAGAATCTATTGAACGTAGATGCCAACATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCGGCTGGTCCAAGATCACTGTGCAATGCTTGTGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAAGGATTGCTTTAGAACAAAATGAACCGGATACTTCAGCTGATATAAAGCCTTCAACAACAGAACCAGAAAATTCTTGTGCTGACCGGGATGAGGGAAGCCCTGAGGAAACTAAGCCTGTGCCAGTGGATTCCAGACAGCCACCTGAAAAGAAAAATGAGCAGTATATACTTGAAACTGCTGAAGCAGTTACTGACAACTTGCCTATACAAATGGAGAATCATGCTCTTAGTCTGCACGAGCAGGATGCTATTGAAGATCTTGCTGATGCTTCAGGGACCGAATTCGAGATTCCAGCAGGTTTTGATGATCAGGTTGATATTGATGATTCCAACATGAGGACCTACTGGCTGTGA 1077 0.4633 MDRAVNPCENGEQSQMVVVPMQVDGVHYSNGASGSEEGEEAPPTTTSGFSGANASLPLSRASELTISFEGEVYVFPAVTPEKVQAVLLLLGGQEMPNSIPTSDFLLQQNCQDIGGISDPSCSSKLSRRIASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKEDYKSPAENLDSSNGTPCPESIERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGRIALEQNEPDTSADIKPSTTEPENSCADRDEGSPEETKPVPVDSRQPPEKKNEQYILETAEAVTDNLPIQMENHALSLHEQDAIEDLADASGTEFEIPAGFDDQVDIDDSNMRTYWL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi559g00037 358 CDD ZnF_GATA 196 239 IPR000679 GO:0006355|GO:0043565
Sebi559g00037 358 SMART tify_2 57 92 IPR010399 -
Sebi559g00037 358 Gene3D - 191 249 IPR013088 GO:0006355|GO:0008270
Sebi559g00037 358 ProSiteProfiles Tify domain profile. 57 92 IPR010399 -
Sebi559g00037 358 MobiDBLite consensus disorder prediction 27 52 - -
Sebi559g00037 358 MobiDBLite consensus disorder prediction 247 291 - -
Sebi559g00037 358 Pfam tify domain 61 91 IPR010399 -
Sebi559g00037 358 ProSiteProfiles GATA-type zinc finger domain profile. 191 248 IPR000679 GO:0006355|GO:0043565
Sebi559g00037 358 Pfam CCT motif 128 169 IPR010402 GO:0005515
Sebi559g00037 358 PANTHER GATA TRANSCRIPTION FACTOR 28 32 337 IPR045280 GO:0006355
Sebi559g00037 358 SMART GATA_3 191 244 IPR000679 GO:0006355|GO:0043565
Sebi559g00037 358 Pfam GATA zinc finger 197 233 IPR000679 GO:0006355|GO:0043565
Sebi559g00037 358 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 244 - -
Sebi559g00037 358 ProSitePatterns GATA-type zinc finger domain. 197 224 IPR000679 GO:0006355|GO:0043565
Sebi559g00037 358 MobiDBLite consensus disorder prediction 264 291 - -
Sebi559g00037 358 ProSiteProfiles CCT domain profile. 128 170 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi559g00037 Sebi-Chr559 494901 501002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi559g00037 32 240 Tify Gene Family AT1G51600 53.182 2.60e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi559g00037 CCT 5.5e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi559g00037 - - gmx:102669848 535.028