Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi559g00024 ATGACTAGGAAAAGGATACAGATCAAGAAAATTGATAACATAAGTTCAAGGCAGGTGACTTTTTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAGGAGCTGTCAACTCTTTGTGATGCAGATATTGCTCTCATGGTCTTTTCTGCAACTAGCAAACTCTTTGAGTATGCTAGTTCAAGTATGCATCAGGTAATTGAAAGGCGTAATCGGCATTCAGCAATTCATAGATTAGACCACCCATCTATTGAGATGCAGGTAGAGAATGACTCTAACGACACGCTGCGCAAGAAAGTAGAAGATAGGACTCATGAGCTGAGGCAGTTGAAGGGGGAAGAGCTGCAAGGATTGACATTACAAGAACTCCAGAAACTAGAGGAACTGCTCAAAAGAGGTTTGAGCAGTGTTTCAAAAGCAAAGGATGAAAAGTTTATGCAAGACATAAGCGCCCTTAGGAGAAAGGGAGTGGAACTGATTGAAGAAAACCAAAAATTGAAACAGGTACCAAGTTTTATACATGGACAAAGGCAATCACGGGAATCCATTATTAGTAGTTCATCTCATCTTCCTGAAGACCATGTCAGTGACACATCTCTCAAGTTGGGGTTATCTTTACTTAAATAA 624 0.4038 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALMVFSATSKLFEYASSSMHQVIERRNRHSAIHRLDHPSIEMQVENDSNDTLRKKVEDRTHELRQLKGEELQGLTLQELQKLEELLKRGLSSVSKAKDEKFMQDISALRRKGVELIEENQKLKQVPSFIHGQRQSRESIISSSSHLPEDHVSDTSLKLGLSLLK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi559g00024 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi559g00024 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi559g00024 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi559g00024 207 Pfam K-box region 92 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi559g00024 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi559g00024 207 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Sebi559g00024 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi559g00024 207 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Sebi559g00024 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sebi559g00024 207 Coils Coil 92 112 - -
Sebi559g00024 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Sebi559g00024 207 Coils Coil 148 168 - -
Sebi559g00024 207 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Sebi559g00024 207 ProSiteProfiles K-box domain profile. 85 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi559g00024 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi559g00024 207 Coils Coil 122 142 - -
Sebi559g00024 207 FunFam Transcription factor, MADS-box 13 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi559g00024 Sebi-Chr559 318278 324820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi559g00024 1 203 MADS-box Gene Family AT2G22540 47.034 2.50e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi559g00024 K-box 5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi559g00024 - - aprc:113860188 280.411