Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi559g00017 ATGGCATCTTCACAAATGCAGTCAATCTTAGCACCCTACAACTATGATGGCCAGTCAAGACTAGCACGCTATGAATACAGCGTCTCCCATGATATGAATGACCAACAACAACAACAACGCCCCAAGCTAATGTCCAATGATCGGTTCAAATTCGACATCAATGTTCTTTCTTGCTCATTTGAATTAAACACTGTTTCATTTGTAAATCTAACAACCTTACTCCACAACTCCTCTCAAGAAATACCTTGCAAAAGCTTCTTTCTCCCAGAAGGTCAAGATTTTTTGCGGTTCCATTTATCACACCCATACATTCCCTCTGAATCACTTGACCTGATCATACCAAGGATCGTGTCTCAAGTTCAACAACTATTTGATCTAATTGATCAAATTGATCTTGCGCCTTCTTCGAATTCGGAATATGTACCAAGTGTGTTCTCTTTGACACTGGACATTATTGTGGAACCTGGAACAGAGCGTGCAGTTAGGGAAGATGTAATTACTAGAATGATTCCTGCATCTACAGAAGCCATCTATTCTTTGAAGGAATGCAAGGTAATGAAACCAAAAGATAACTGTAGTATCTGTATGGAAGAGTTTGGTGATGATGTTGATGGCGTAACGGTCTCTGCAATGCCCTGCAATCATCTGTTTCACCAACAATGTATTGTGCAATGGTTACAAACAAATCATGTGTGCCCCTTGTGTCGCTATTCCATGCCCACATATCAAAAGGAAACGACATATAATATATAA 753 0.3971 MASSQMQSILAPYNYDGQSRLARYEYSVSHDMNDQQQQQRPKLMSNDRFKFDINVLSCSFELNTVSFVNLTTLLHNSSQEIPCKSFFLPEGQDFLRFHLSHPYIPSESLDLIIPRIVSQVQQLFDLIDQIDLAPSSNSEYVPSVFSLTLDIIVEPGTERAVREDVITRMIPASTEAIYSLKECKVMKPKDNCSICMEEFGDDVDGVTVSAMPCNHLFHQQCIVQWLQTNHVCPLCRYSMPTYQKETTYNI 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi559g00017 250 SMART ring_2 192 235 IPR001841 -
Sebi559g00017 250 ProSiteProfiles Zinc finger RING-type profile. 192 236 IPR001841 -
Sebi559g00017 250 SUPERFAMILY RING/U-box 183 242 - -
Sebi559g00017 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 34 240 - -
Sebi559g00017 250 Pfam Ring finger domain 190 236 IPR001841 -
Sebi559g00017 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 242 IPR013083 -
Sebi559g00017 250 CDD RING-H2_PA-TM-RING 192 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi559g00017 Sebi-Chr559 170619 171371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi559g00017 153 240 C3H Transcription Factor Family AT1G18760 34.066 1.12e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi559g00017 - - vvo:131651309 131.339