Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi559g00016 ATGGTTCCTTCAATTTCTGCACGAACAAGACAGTACCATTATACCATGTGGTGTGAATCGCAGCCGAGCCCCATACCGATTCCTGAAGATACATTCAAATTCAACATCAGAGTTATATCTCACCCCACAGATATGAACGCCAACACAAGACTTACACAGTTACTACACCATCCCCAAGAACGCATACGCGTCCAGAACCTCTTCCATGAGGGTTATCACTTTCTACGTACACTTTTATCTCACCCACAATTTTCCACTGAATATCGCAATCGAATAGTTGATGAGATCATTCCCAATGTTTGTCAACTCTTCCCACGTGACCGTACTACTTCTTTTGATCCTTCAGTCCAACCCCAAGAGTTCGCTTTGAATTTGATCGTTGTCCTCTATCTTGATGTTGATGATGAGCTTGTGGTGGTCGAAGAGTCCTTGCAAGATTTCAGAATGATTCCAGCGTCTAAGAAAGCCATCCAGATGTCATTGAAGAAATCAAAGGTCACCAAAGAGAATGAGTGTTGCACTATTTGCATGGAAGAGTTTGAAGTTGATGGCACGGTCACAATGCCATGCAATCATATGTTTCATCAACCATGTATTGTGCGCTGGCTAGAAACTAGTCATGTGTGTCCATTGTGTCGCTACCCTTTGCCCGTTAACGAAGAAAAAATAGTAGAAATTTAG 681 0.4244 MVPSISARTRQYHYTMWCESQPSPIPIPEDTFKFNIRVISHPTDMNANTRLTQLLHHPQERIRVQNLFHEGYHFLRTLLSHPQFSTEYRNRIVDEIIPNVCQLFPRDRTTSFDPSVQPQEFALNLIVVLYLDVDDELVVVEESLQDFRMIPASKKAIQMSLKKSKVTKENECCTICMEEFEVDGTVTMPCNHMFHQPCIVRWLETSHVCPLCRYPLPVNEEKIVEI 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi559g00016 226 Pfam Ring finger domain 173 213 IPR001841 -
Sebi559g00016 226 SUPERFAMILY RING/U-box 162 219 - -
Sebi559g00016 226 ProSiteProfiles Zinc finger RING-type profile. 173 213 IPR001841 -
Sebi559g00016 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 68 217 - -
Sebi559g00016 226 CDD RING-H2_PA-TM-RING 172 213 - -
Sebi559g00016 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 225 IPR013083 -
Sebi559g00016 226 SMART ring_2 173 212 IPR001841 -
Sebi559g00016 226 SMART ringv_2 172 213 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi559g00016 Sebi-Chr559 163743 164663 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi559g00016 142 221 C3H Transcription Factor Family AT1G18760 41.667 6.52e-16 72.0