Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi557g00006 ATGGCTTCTTCCTTGGATATGTCACTGGACGATAGAATAAAGAACAGGAGTAACAACAGAGGGAGAGGTAGAGGACGTGGCAGAGCCCGTTCTGGCCGTGGGCCAAACGGGACTCTTAGTGGTGGAAGAATGACTGGTGCTGTTAATGGTAGAAGAATGGCTGGTCCTGGTAATGGTGGAAGAACATCTAGTGCTGTTCGTAGAGGTCCTCTTATGTCTATTCGCAGAACCAGGCCTTTTCCATGGCAGAAAGATTTGTTTGAAGATAGCCTAAGAGCTGCGGGGATTCAGGGAATAGAAGTTGGCACCAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTGGGAGACCTGAAGCGCTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTTGTCTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATACAACAATGTACTTTTGGATGGGAAGCCCATGAAGATTGAGATTGTTGGTGCCAATTCAGAGTTGCCTATATCTGCTCGTGTGAATGTCACTGGGATGAATGGACAGAGGAAGAGAACAGTTGTAATGACGCCTAGAGGTGGTCGAGCTGGAGGTCCTGCCATGCCTAATCGTGGTGCTGGTTGGGGACGTCGTGGTGGCACAAGGAGTGGGAGTGGGAGTGGACGTGGTCGAGGCCGTCGTGGCAGGGGTGGAGGCCGAGGTCGTGGAAGAAAGGATGCAACTGAGAAGTCAGCTGAGCAACTTGACAAGGAACTGGAGACCTATCATGCTGAGGCCATGCATATCTCATGA 840 0.4893 MASSLDMSLDDRIKNRSNNRGRGRGRGRARSGRGPNGTLSGGRMTGAVNGRRMAGPGNGGRTSSAVRRGPLMSIRRTRPFPWQKDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFSELGDLKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANSELPISARVNVTGMNGQRKRTVVMTPRGGRAGGPAMPNRGAGWGRRGGTRSGSGSGRGRGRRGRGGGRGRGRKDATEKSAEQLDKELETYHAEAMHIS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi557g00006 279 Coils Coil 254 274 - -
Sebi557g00006 279 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 277 - -
Sebi557g00006 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 173 IPR000504 GO:0003723
Sebi557g00006 279 SMART FoP_duplication_2 207 279 IPR025715 -
Sebi557g00006 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 180 IPR000504 GO:0003723
Sebi557g00006 279 MobiDBLite consensus disorder prediction 205 265 - -
Sebi557g00006 279 CDD RRM_THOC4 103 177 - -
Sebi557g00006 279 SMART rrm1_1 104 176 IPR000504 GO:0003723
Sebi557g00006 279 MobiDBLite consensus disorder prediction 250 265 - -
Sebi557g00006 279 SUPERFAMILY RNA-binding domain, RBD 19 177 IPR035979 GO:0003676
Sebi557g00006 279 Gene3D - 96 260 IPR012677 -
Sebi557g00006 279 MobiDBLite consensus disorder prediction 1 67 - -
Sebi557g00006 279 Pfam C-terminal duplication domain of Friend of PRMT1 213 273 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi557g00006 Sebi-Chr557 150684 154384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi557g00006 102 177 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 1.81e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi557g00006 K12881 - gmx:100801491 397.897